miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28900 5' -58.9 NC_006146.1 + 124314 0.66 0.850867
Target:  5'- aCCCCAuCGu-GGCCAUgacgcugcugGCGCACG-CCa -3'
miRNA:   3'- cGGGGU-GCucCCGGUA----------CGUGUGCuGG- -5'
28900 5' -58.9 NC_006146.1 + 67590 0.66 0.850867
Target:  5'- aCUgCGCGuGGGCCAgauagacguaGCGCACGAg- -3'
miRNA:   3'- cGGgGUGCuCCCGGUa---------CGUGUGCUgg -5'
28900 5' -58.9 NC_006146.1 + 153692 0.66 0.850867
Target:  5'- gGgUCCugGAGGGCCucGUACuucuCGugCa -3'
miRNA:   3'- -CgGGGugCUCCCGGuaCGUGu---GCugG- -5'
28900 5' -58.9 NC_006146.1 + 94624 0.66 0.850867
Target:  5'- -gCCCACGuacuGGGCCggGUcCAUGAUg -3'
miRNA:   3'- cgGGGUGCu---CCCGGuaCGuGUGCUGg -5'
28900 5' -58.9 NC_006146.1 + 157837 0.66 0.850867
Target:  5'- gGCCCCG-GAGGGgaCggGCAC-CGAgCg -3'
miRNA:   3'- -CGGGGUgCUCCCg-GuaCGUGuGCUgG- -5'
28900 5' -58.9 NC_006146.1 + 87144 0.66 0.850867
Target:  5'- cUCCCACca-GGCCAcccacUGCuCACGGCCc -3'
miRNA:   3'- cGGGGUGcucCCGGU-----ACGuGUGCUGG- -5'
28900 5' -58.9 NC_006146.1 + 139161 0.66 0.850867
Target:  5'- cCCCCGgGGGGGCgCcUGUgAgGCGGCUg -3'
miRNA:   3'- cGGGGUgCUCCCG-GuACG-UgUGCUGG- -5'
28900 5' -58.9 NC_006146.1 + 42755 0.66 0.850867
Target:  5'- -gCCUGCGgcagcAGGGCCgacagGUGCAgGCGGCg -3'
miRNA:   3'- cgGGGUGC-----UCCCGG-----UACGUgUGCUGg -5'
28900 5' -58.9 NC_006146.1 + 60504 0.66 0.850867
Target:  5'- cCCCCgacgGCGAGGGUgcuccCACugGGCCc -3'
miRNA:   3'- cGGGG----UGCUCCCGguac-GUGugCUGG- -5'
28900 5' -58.9 NC_006146.1 + 75824 0.66 0.850867
Target:  5'- gGCCCUGCGGGa--CAUGCAccaggggagcuCugGACCa -3'
miRNA:   3'- -CGGGGUGCUCccgGUACGU-----------GugCUGG- -5'
28900 5' -58.9 NC_006146.1 + 103686 0.66 0.850867
Target:  5'- uGUgCCugGccGGCCAggcgaccgGC-CACGGCCa -3'
miRNA:   3'- -CGgGGugCucCCGGUa-------CGuGUGCUGG- -5'
28900 5' -58.9 NC_006146.1 + 124624 0.66 0.850103
Target:  5'- cGCCgCCACcGGGGCUcaaaacgucggggAcGCGCACcGCCg -3'
miRNA:   3'- -CGG-GGUGcUCCCGG-------------UaCGUGUGcUGG- -5'
28900 5' -58.9 NC_006146.1 + 1510 0.66 0.843145
Target:  5'- gGCCUCGuuuGGGUgGUGCugAUGAUCa -3'
miRNA:   3'- -CGGGGUgcuCCCGgUACGugUGCUGG- -5'
28900 5' -58.9 NC_006146.1 + 80830 0.66 0.843145
Target:  5'- -gCCUugGAGacacGGCCAUGgCcCACGugCa -3'
miRNA:   3'- cgGGGugCUC----CCGGUAC-GuGUGCugG- -5'
28900 5' -58.9 NC_006146.1 + 55643 0.66 0.843145
Target:  5'- gGCCCC-CGAGGggugcagcagccggaGCCAggcggcguugaagGCcagcacggGCACGGCCg -3'
miRNA:   3'- -CGGGGuGCUCC---------------CGGUa------------CG--------UGUGCUGG- -5'
28900 5' -58.9 NC_006146.1 + 33266 0.66 0.843145
Target:  5'- uGCCCCGCuccgggugggGGGuGGCCcgGCugGgcACCg -3'
miRNA:   3'- -CGGGGUG----------CUC-CCGGuaCGugUgcUGG- -5'
28900 5' -58.9 NC_006146.1 + 76487 0.66 0.843145
Target:  5'- -aCCCugGucGGCC-UGCcaagccuCACGGCCc -3'
miRNA:   3'- cgGGGugCucCCGGuACGu------GUGCUGG- -5'
28900 5' -58.9 NC_006146.1 + 10806 0.66 0.843145
Target:  5'- gGUCgCCACGcuGGGCaCcgGCuACACgGGCCa -3'
miRNA:   3'- -CGG-GGUGCu-CCCG-GuaCG-UGUG-CUGG- -5'
28900 5' -58.9 NC_006146.1 + 110835 0.66 0.843145
Target:  5'- aGCUCCACGGGacgaGGCg--GCGCcCGAUCa -3'
miRNA:   3'- -CGGGGUGCUC----CCGguaCGUGuGCUGG- -5'
28900 5' -58.9 NC_006146.1 + 120499 0.66 0.843145
Target:  5'- cGUCCCugGc-GGCCGaGgACGCGAgCCg -3'
miRNA:   3'- -CGGGGugCucCCGGUaCgUGUGCU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.