miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28901 3' -59.5 NC_006146.1 + 167270 0.66 0.788354
Target:  5'- gGC-CCGg--GGcCGCGCGUGGGgAUg -3'
miRNA:   3'- aCGaGGCagaCCuGCGUGCACCCgUA- -5'
28901 3' -59.5 NC_006146.1 + 100235 0.66 0.788354
Target:  5'- aGCUCCGUggcagUGGgggcguucACGCACGgGGGCu- -3'
miRNA:   3'- aCGAGGCAg----ACC--------UGCGUGCaCCCGua -5'
28901 3' -59.5 NC_006146.1 + 169134 0.66 0.788354
Target:  5'- gGC-CCGg--GGcCGCGCGUGGGgAUg -3'
miRNA:   3'- aCGaGGCagaCCuGCGUGCACCCgUA- -5'
28901 3' -59.5 NC_006146.1 + 168202 0.66 0.788354
Target:  5'- gGC-CCGg--GGcCGCGCGUGGGgAUg -3'
miRNA:   3'- aCGaGGCagaCCuGCGUGCACCCgUA- -5'
28901 3' -59.5 NC_006146.1 + 170066 0.66 0.788354
Target:  5'- gGC-CCGg--GGcCGCGCGUGGGgAUg -3'
miRNA:   3'- aCGaGGCagaCCuGCGUGCACCCgUA- -5'
28901 3' -59.5 NC_006146.1 + 139130 0.66 0.770174
Target:  5'- gGCUCCGa-UGG-CGCAgGUGGGgGc -3'
miRNA:   3'- aCGAGGCagACCuGCGUgCACCCgUa -5'
28901 3' -59.5 NC_006146.1 + 129651 0.66 0.751521
Target:  5'- gGCUCCGUCUGGGgucUGUACcagagcaGGGCc- -3'
miRNA:   3'- aCGAGGCAGACCU---GCGUGca-----CCCGua -5'
28901 3' -59.5 NC_006146.1 + 33393 0.67 0.732464
Target:  5'- cGCUCCGgguggggGGugGCcCGccUGGGCAc -3'
miRNA:   3'- aCGAGGCaga----CCugCGuGC--ACCCGUa -5'
28901 3' -59.5 NC_006146.1 + 33271 0.67 0.732464
Target:  5'- cGCUCCGgguggggGGugGCcCGgcUGGGCAc -3'
miRNA:   3'- aCGAGGCaga----CCugCGuGC--ACCCGUa -5'
28901 3' -59.5 NC_006146.1 + 33147 0.67 0.732464
Target:  5'- cGCUCCGgguggggGGugGCcCGgcUGGGCAc -3'
miRNA:   3'- aCGAGGCaga----CCugCGuGC--ACCCGUa -5'
28901 3' -59.5 NC_006146.1 + 53935 0.67 0.713074
Target:  5'- aGCUCCucgagGUCcGGACGCAgGggcucacGGGCGUu -3'
miRNA:   3'- aCGAGG-----CAGaCCUGCGUgCa------CCCGUA- -5'
28901 3' -59.5 NC_006146.1 + 41210 0.67 0.713074
Target:  5'- cGCcccaUCCGcgggcaCUGGGCGCGCGUGGcCAg -3'
miRNA:   3'- aCG----AGGCa-----GACCUGCGUGCACCcGUa -5'
28901 3' -59.5 NC_006146.1 + 167227 0.67 0.713074
Target:  5'- uUGCUCCccacgCUGGggugugacagaACGCugGUGaGGCAg -3'
miRNA:   3'- -ACGAGGca---GACC-----------UGCGugCAC-CCGUa -5'
28901 3' -59.5 NC_006146.1 + 88565 0.67 0.703275
Target:  5'- gUGCUCCGUaacccggauaUGGA-GCugGUGGGgGc -3'
miRNA:   3'- -ACGAGGCAg---------ACCUgCGugCACCCgUa -5'
28901 3' -59.5 NC_006146.1 + 167820 0.67 0.703275
Target:  5'- aGCUCCagagcgGUCUGGACGguaGCcUGGGCc- -3'
miRNA:   3'- aCGAGG------CAGACCUGCg--UGcACCCGua -5'
28901 3' -59.5 NC_006146.1 + 69716 0.67 0.683512
Target:  5'- aGCUCCGag-GGGCGCAgCGUGGaGUu- -3'
miRNA:   3'- aCGAGGCagaCCUGCGU-GCACC-CGua -5'
28901 3' -59.5 NC_006146.1 + 9968 0.68 0.663586
Target:  5'- aUGCUCUaUCUGGACcCGCGUguaaGGGUGUg -3'
miRNA:   3'- -ACGAGGcAGACCUGcGUGCA----CCCGUA- -5'
28901 3' -59.5 NC_006146.1 + 65408 0.68 0.663586
Target:  5'- aGauaUCUGg-UGGACGC-CGUGGGCAa -3'
miRNA:   3'- aCg--AGGCagACCUGCGuGCACCCGUa -5'
28901 3' -59.5 NC_006146.1 + 130033 0.68 0.623506
Target:  5'- gGCUCCGUCUccGGAC-CGCGagccGGGCc- -3'
miRNA:   3'- aCGAGGCAGA--CCUGcGUGCa---CCCGua -5'
28901 3' -59.5 NC_006146.1 + 56803 0.69 0.613482
Target:  5'- gGCggCCGUCUGG-CGgGCG-GGGCu- -3'
miRNA:   3'- aCGa-GGCAGACCuGCgUGCaCCCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.