miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28901 5' -60.1 NC_006146.1 + 61934 0.66 0.779675
Target:  5'- aGGGGCuCCaGGGCCCUGGuCCAcgggacgguGCACa- -3'
miRNA:   3'- cUUCUG-GG-CCCGGGACU-GGU---------CGUGcu -5'
28901 5' -60.1 NC_006146.1 + 49883 0.66 0.779675
Target:  5'- gGGAGGCUgGGGUCCU--CCGGUAgGAg -3'
miRNA:   3'- -CUUCUGGgCCCGGGAcuGGUCGUgCU- -5'
28901 5' -60.1 NC_006146.1 + 46384 0.66 0.778776
Target:  5'- -cAGGCCCccgucccucgccaGGGCCgaGACCAGgC-CGAg -3'
miRNA:   3'- cuUCUGGG-------------CCCGGgaCUGGUC-GuGCU- -5'
28901 5' -60.1 NC_006146.1 + 50296 0.66 0.778776
Target:  5'- aGGAGAUcugucaggcgccgCCGGGCCUUGuCCAGguCa- -3'
miRNA:   3'- -CUUCUG-------------GGCCCGGGACuGGUCguGcu -5'
28901 5' -60.1 NC_006146.1 + 158828 0.66 0.770634
Target:  5'- --cGGCCgGGGCCC-GGCCcucgcaaagcgAGCACa- -3'
miRNA:   3'- cuuCUGGgCCCGGGaCUGG-----------UCGUGcu -5'
28901 5' -60.1 NC_006146.1 + 163802 0.66 0.770634
Target:  5'- ---aGCCUGGGCCUUGGCgGGC-Ca- -3'
miRNA:   3'- cuucUGGGCCCGGGACUGgUCGuGcu -5'
28901 5' -60.1 NC_006146.1 + 27637 0.66 0.770634
Target:  5'- gGAAGuuCCGGGCCagcgucaccgGGCCAGCcUGGu -3'
miRNA:   3'- -CUUCugGGCCCGGga--------CUGGUCGuGCU- -5'
28901 5' -60.1 NC_006146.1 + 55381 0.66 0.770634
Target:  5'- gGGAcGCCCGGGgcaCCgaGGCCAGCAUc- -3'
miRNA:   3'- -CUUcUGGGCCC---GGgaCUGGUCGUGcu -5'
28901 5' -60.1 NC_006146.1 + 53334 0.66 0.761478
Target:  5'- aGGAGGCCCGGcGgCCgcgGGgCGGCGUGAg -3'
miRNA:   3'- -CUUCUGGGCC-CgGGa--CUgGUCGUGCU- -5'
28901 5' -60.1 NC_006146.1 + 108529 0.66 0.761478
Target:  5'- uGAAcGGCCagGGGCCUcu-CCGGCGCGGc -3'
miRNA:   3'- -CUU-CUGGg-CCCGGGacuGGUCGUGCU- -5'
28901 5' -60.1 NC_006146.1 + 49000 0.66 0.761478
Target:  5'- gGGAGGCUgGGGCgUUGcCCAGCuuGGg -3'
miRNA:   3'- -CUUCUGGgCCCGgGACuGGUCGugCU- -5'
28901 5' -60.1 NC_006146.1 + 160665 0.66 0.761478
Target:  5'- gGGAGGCCUucaGGGCCggcacaUGACCAGgGCc- -3'
miRNA:   3'- -CUUCUGGG---CCCGGg-----ACUGGUCgUGcu -5'
28901 5' -60.1 NC_006146.1 + 14836 0.66 0.761478
Target:  5'- -cGGuCUCGGGCCCggGGCC-GCGgGAg -3'
miRNA:   3'- cuUCuGGGCCCGGGa-CUGGuCGUgCU- -5'
28901 5' -60.1 NC_006146.1 + 32108 0.66 0.760556
Target:  5'- ----cCCCGGGCCCauccGAagcucucCCAGCACGu -3'
miRNA:   3'- cuucuGGGCCCGGGa---CU-------GGUCGUGCu -5'
28901 5' -60.1 NC_006146.1 + 115385 0.66 0.752214
Target:  5'- uGGAGGCCCuGGCCgCUcGCguGCAgGAg -3'
miRNA:   3'- -CUUCUGGGcCCGG-GAcUGguCGUgCU- -5'
28901 5' -60.1 NC_006146.1 + 40002 0.66 0.752214
Target:  5'- --uGGCCCGGcaGCCuUUGACCGGUcagACGGg -3'
miRNA:   3'- cuuCUGGGCC--CGG-GACUGGUCG---UGCU- -5'
28901 5' -60.1 NC_006146.1 + 113665 0.66 0.752214
Target:  5'- --uGACCaCGGGCCCgugGACCAcCGUGGu -3'
miRNA:   3'- cuuCUGG-GCCCGGGa--CUGGUcGUGCU- -5'
28901 5' -60.1 NC_006146.1 + 162396 0.66 0.752214
Target:  5'- ---cGCCCGGGaCCCcggugGGCCAGgAUGGu -3'
miRNA:   3'- cuucUGGGCCC-GGGa----CUGGUCgUGCU- -5'
28901 5' -60.1 NC_006146.1 + 100416 0.66 0.752214
Target:  5'- --uGACCCGcGCCCUGACacucucCACGGg -3'
miRNA:   3'- cuuCUGGGCcCGGGACUGguc---GUGCU- -5'
28901 5' -60.1 NC_006146.1 + 54709 0.66 0.752214
Target:  5'- aGggGACggCGGGCCCgGGUCAGgGCGGc -3'
miRNA:   3'- -CuuCUGg-GCCCGGGaCUGGUCgUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.