miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28901 5' -60.1 NC_006146.1 + 162396 0.66 0.752214
Target:  5'- ---cGCCCGGGaCCCcggugGGCCAGgAUGGu -3'
miRNA:   3'- cuucUGGGCCC-GGGa----CUGGUCgUGCU- -5'
28901 5' -60.1 NC_006146.1 + 86372 0.66 0.742851
Target:  5'- ---cACCUGccacGGCgCCUGuACCGGCACGAc -3'
miRNA:   3'- cuucUGGGC----CCG-GGAC-UGGUCGUGCU- -5'
28901 5' -60.1 NC_006146.1 + 14533 0.66 0.742851
Target:  5'- uGGAGAgccuggaCCGGGCCCUGGagCuGCugGGc -3'
miRNA:   3'- -CUUCUg------GGCCCGGGACUg-GuCGugCU- -5'
28901 5' -60.1 NC_006146.1 + 46810 0.66 0.742851
Target:  5'- aAAGGCCUcuGGGUUCU--CCAGCACGGu -3'
miRNA:   3'- cUUCUGGG--CCCGGGAcuGGUCGUGCU- -5'
28901 5' -60.1 NC_006146.1 + 111667 0.66 0.742851
Target:  5'- -cAGAUCCGGGCCaucaaGCCAaucccccuGCGCGAc -3'
miRNA:   3'- cuUCUGGGCCCGGgac--UGGU--------CGUGCU- -5'
28901 5' -60.1 NC_006146.1 + 137587 0.66 0.742851
Target:  5'- -cGGAcCCCGGaGCCCcagGACCgAGCgGCGGc -3'
miRNA:   3'- cuUCU-GGGCC-CGGGa--CUGG-UCG-UGCU- -5'
28901 5' -60.1 NC_006146.1 + 129049 0.66 0.742851
Target:  5'- cGAGGcCCCGGuagcCCCUGGCCAcgGCcCGGg -3'
miRNA:   3'- -CUUCuGGGCCc---GGGACUGGU--CGuGCU- -5'
28901 5' -60.1 NC_006146.1 + 128880 0.66 0.742851
Target:  5'- uGAG-CCCGGGCCCagaggGAgUAGCuCGGc -3'
miRNA:   3'- cUUCuGGGCCCGGGa----CUgGUCGuGCU- -5'
28901 5' -60.1 NC_006146.1 + 52136 0.66 0.733397
Target:  5'- ---aGCUCGGGCCCc-ACCAGguCGAa -3'
miRNA:   3'- cuucUGGGCCCGGGacUGGUCguGCU- -5'
28901 5' -60.1 NC_006146.1 + 117721 0.66 0.733397
Target:  5'- cAAGGCCgGGGCCgaGGCCgAGCcuucCGGc -3'
miRNA:   3'- cUUCUGGgCCCGGgaCUGG-UCGu---GCU- -5'
28901 5' -60.1 NC_006146.1 + 61612 0.66 0.733397
Target:  5'- --cGGCCgGGGCCgaGAucccucCCAGCuACGAc -3'
miRNA:   3'- cuuCUGGgCCCGGgaCU------GGUCG-UGCU- -5'
28901 5' -60.1 NC_006146.1 + 56130 0.67 0.723861
Target:  5'- --uGGCCgCGGGCCCcgaGACCgagAGCACc- -3'
miRNA:   3'- cuuCUGG-GCCCGGGa--CUGG---UCGUGcu -5'
28901 5' -60.1 NC_006146.1 + 114144 0.67 0.718103
Target:  5'- uGAGGCuCCGGaccaggcgcaugcugGCCCUGGgCAGCAgGGu -3'
miRNA:   3'- cUUCUG-GGCC---------------CGGGACUgGUCGUgCU- -5'
28901 5' -60.1 NC_006146.1 + 20900 0.67 0.714251
Target:  5'- cAAGGCCUucgugGaGGCCCUGAguCCGGC-CGAc -3'
miRNA:   3'- cUUCUGGG-----C-CCGGGACU--GGUCGuGCU- -5'
28901 5' -60.1 NC_006146.1 + 121342 0.67 0.714251
Target:  5'- cGAGGCCaugcuGGG-CCUGGCCGGCGUGGc -3'
miRNA:   3'- cUUCUGGg----CCCgGGACUGGUCGUGCU- -5'
28901 5' -60.1 NC_006146.1 + 129049 0.67 0.714251
Target:  5'- --cGAgCUGGGCCCaGacGCCGGCGCa- -3'
miRNA:   3'- cuuCUgGGCCCGGGaC--UGGUCGUGcu -5'
28901 5' -60.1 NC_006146.1 + 167891 0.67 0.713286
Target:  5'- gGgcGGCCCGGGgaCCCUcgcggggGcACCGGCGCGu -3'
miRNA:   3'- -CuuCUGGGCCC--GGGA-------C-UGGUCGUGCu -5'
28901 5' -60.1 NC_006146.1 + 169755 0.67 0.713286
Target:  5'- gGgcGGCCCGGGgaCCCUcgcggggGcACCGGCGCGu -3'
miRNA:   3'- -CuuCUGGGCCC--GGGA-------C-UGGUCGUGCu -5'
28901 5' -60.1 NC_006146.1 + 168823 0.67 0.713286
Target:  5'- gGgcGGCCCGGGgaCCCUcgcggggGcACCGGCGCGu -3'
miRNA:   3'- -CuuCUGGGCCC--GGGA-------C-UGGUCGUGCu -5'
28901 5' -60.1 NC_006146.1 + 99598 0.67 0.704575
Target:  5'- uGGGGCCgCGGuGCUCUGcgUAGCACGAg -3'
miRNA:   3'- cUUCUGG-GCC-CGGGACugGUCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.