miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28901 5' -60.1 NC_006146.1 + 167403 0.81 0.125268
Target:  5'- cGGGGCCgGGGCCUggcgggGGCCAGCGCGGg -3'
miRNA:   3'- cUUCUGGgCCCGGGa-----CUGGUCGUGCU- -5'
28901 5' -60.1 NC_006146.1 + 46129 0.75 0.284328
Target:  5'- ---uGCCCGGGCCCUGGCCGuGCucUGAu -3'
miRNA:   3'- cuucUGGGCCCGGGACUGGU-CGu-GCU- -5'
28901 5' -60.1 NC_006146.1 + 51845 0.74 0.332337
Target:  5'- gGggGGCUCGGGgCCUGGCCcgAGCcCGGg -3'
miRNA:   3'- -CuuCUGGGCCCgGGACUGG--UCGuGCU- -5'
28901 5' -60.1 NC_006146.1 + 49883 0.66 0.779675
Target:  5'- gGGAGGCUgGGGUCCU--CCGGUAgGAg -3'
miRNA:   3'- -CUUCUGGgCCCGGGAcuGGUCGUgCU- -5'
28901 5' -60.1 NC_006146.1 + 155863 0.77 0.200135
Target:  5'- -cAGGCCCggcGGGCCCUGGCCAGgCGCc- -3'
miRNA:   3'- cuUCUGGG---CCCGGGACUGGUC-GUGcu -5'
28901 5' -60.1 NC_006146.1 + 150994 0.77 0.209963
Target:  5'- aGAuGugCCGGGCCCUGuCCAGgACGu -3'
miRNA:   3'- -CUuCugGGCCCGGGACuGGUCgUGCu -5'
28901 5' -60.1 NC_006146.1 + 168198 0.77 0.209963
Target:  5'- gGAGGGCCCGGGgCCgcgcguggggaUGGCCGGCGgGAg -3'
miRNA:   3'- -CUUCUGGGCCCgGG-----------ACUGGUCGUgCU- -5'
28901 5' -60.1 NC_006146.1 + 169130 0.77 0.209963
Target:  5'- gGAGGGCCCGGGgCCgcgcguggggaUGGCCGGCGgGAg -3'
miRNA:   3'- -CUUCUGGGCCCgGG-----------ACUGGUCGUgCU- -5'
28901 5' -60.1 NC_006146.1 + 12711 0.75 0.265493
Target:  5'- aGAGGCCCGcGGCCauuggGGCCAGCaaGCGAg -3'
miRNA:   3'- cUUCUGGGC-CCGGga---CUGGUCG--UGCU- -5'
28901 5' -60.1 NC_006146.1 + 113683 0.75 0.271656
Target:  5'- -cGGGCCCGGGCCCggccuCCGGCcCGGg -3'
miRNA:   3'- cuUCUGGGCCCGGGacu--GGUCGuGCU- -5'
28901 5' -60.1 NC_006146.1 + 18868 0.75 0.265493
Target:  5'- aGAGGCCCGcGGCCauuggGGCCAGCaaGCGAg -3'
miRNA:   3'- cUUCUGGGC-CCGGga---CUGGUCG--UGCU- -5'
28901 5' -60.1 NC_006146.1 + 145124 0.76 0.236365
Target:  5'- aGAAGGCCUGGGCCaggcuCUGGCCGGuCACu- -3'
miRNA:   3'- -CUUCUGGGCCCGG-----GACUGGUC-GUGcu -5'
28901 5' -60.1 NC_006146.1 + 168335 0.81 0.125268
Target:  5'- cGGGGCCgGGGCCUggcgggGGCCAGCGCGGg -3'
miRNA:   3'- cUUCUGGgCCCGGGa-----CUGGUCGUGCU- -5'
28901 5' -60.1 NC_006146.1 + 25023 0.75 0.265493
Target:  5'- aGAGGCCCGcGGCCauuggGGCCAGCaaGCGAg -3'
miRNA:   3'- cUUCUGGGC-CCGGga---CUGGUCG--UGCU- -5'
28901 5' -60.1 NC_006146.1 + 169267 0.81 0.125268
Target:  5'- cGGGGCCgGGGCCUggcgggGGCCAGCGCGGg -3'
miRNA:   3'- cUUCUGGgCCCGGGa-----CUGGUCGUGCU- -5'
28901 5' -60.1 NC_006146.1 + 170062 0.77 0.209963
Target:  5'- gGAGGGCCCGGGgCCgcgcguggggaUGGCCGGCGgGAg -3'
miRNA:   3'- -CUUCUGGGCCCgGG-----------ACUGGUCGUgCU- -5'
28901 5' -60.1 NC_006146.1 + 28101 0.75 0.265493
Target:  5'- aGAGGCCCGcGGCCauuggGGCCAGCaaGCGAg -3'
miRNA:   3'- cUUCUGGGC-CCGGga---CUGGUCG--UGCU- -5'
28901 5' -60.1 NC_006146.1 + 67140 0.74 0.324414
Target:  5'- gGAAGACCgGGaGCCgCUGGCCgcuccugAGCGCGGc -3'
miRNA:   3'- -CUUCUGGgCC-CGG-GACUGG-------UCGUGCU- -5'
28901 5' -60.1 NC_006146.1 + 170198 0.81 0.125268
Target:  5'- cGGGGCCgGGGCCUggcgggGGCCAGCGCGGg -3'
miRNA:   3'- cUUCUGGgCCCGGGa-----CUGGUCGUGCU- -5'
28901 5' -60.1 NC_006146.1 + 167266 0.77 0.209963
Target:  5'- gGAGGGCCCGGGgCCgcgcguggggaUGGCCGGCGgGAg -3'
miRNA:   3'- -CUUCUGGGCCCgGG-----------ACUGGUCGUgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.