Results 41 - 60 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28903 | 5' | -47 | NC_006146.1 | + | 116350 | 0.67 | 0.999595 |
Target: 5'- cCACGguGGGGCGGAgaucGGAGAucuCAA-GGa -3' miRNA: 3'- -GUGCguUCCCGUUUa---CUUCU---GUUaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 71410 | 0.67 | 0.999595 |
Target: 5'- -uUGCAuuuuGGGCAGGU-AGGAUGGUGGu -3' miRNA: 3'- guGCGUu---CCCGUUUAcUUCUGUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 54364 | 0.67 | 0.999848 |
Target: 5'- --aGCAGGGaaaaGAGUGAggugggccAGACGAUGGg -3' miRNA: 3'- gugCGUUCCcg--UUUACU--------UCUGUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 126716 | 0.67 | 0.999748 |
Target: 5'- -uCGCAGGGcGCAGAggcugGAGGGCAc--- -3' miRNA: 3'- guGCGUUCC-CGUUUa----CUUCUGUuacc -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 137840 | 0.67 | 0.999748 |
Target: 5'- aAgGCAGGGGgGcucGggGugGGUGGg -3' miRNA: 3'- gUgCGUUCCCgUuuaCuuCugUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 53951 | 0.67 | 0.999848 |
Target: 5'- gACGCAGGGGCucAcgGGcguuuucccacAGGgGGUGGu -3' miRNA: 3'- gUGCGUUCCCGu-UuaCU-----------UCUgUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 49394 | 0.67 | 0.999863 |
Target: 5'- uCGCGCAGGcGGaugUAGGUGggGuucuuggcggcccccACGAUGGa -3' miRNA: 3'- -GUGCGUUC-CC---GUUUACuuC---------------UGUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 101859 | 0.67 | 0.999595 |
Target: 5'- -cCGCAccacgGGuGGCGGGgcGAGGACGGUGGc -3' miRNA: 3'- guGCGU-----UC-CCGUUUa-CUUCUGUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 159830 | 0.67 | 0.999595 |
Target: 5'- uCGCgGguGGGGCAAccuGUGGgcgGGugGGUGGu -3' miRNA: 3'- -GUG-CguUCCCGUU---UACU---UCugUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 57292 | 0.67 | 0.999595 |
Target: 5'- aGCGCcGGGGCAGGcgacGGAGAgAcUGGc -3' miRNA: 3'- gUGCGuUCCCGUUUa---CUUCUgUuACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 87178 | 0.67 | 0.999772 |
Target: 5'- cCugGCAuacuauuugccacccAGGGUGAGagGAGGACAGgUGGc -3' miRNA: 3'- -GugCGU---------------UCCCGUUUa-CUUCUGUU-ACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 103054 | 0.68 | 0.999492 |
Target: 5'- aGCGCcguguaggAGGGGUAGAUGggGuCAAacucagacuUGGa -3' miRNA: 3'- gUGCG--------UUCCCGUUUACuuCuGUU---------ACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 72008 | 0.68 | 0.998818 |
Target: 5'- cCugGCGcGGGUGAGUagcgggGGAGugGGUGGu -3' miRNA: 3'- -GugCGUuCCCGUUUA------CUUCugUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 85612 | 0.68 | 0.999492 |
Target: 5'- gCugGCAccGGGGCAAagGGccagagaggcAGACAggGGc -3' miRNA: 3'- -GugCGU--UCCCGUUuaCU----------UCUGUuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 2934 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 2902 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 2870 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 2001 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 139114 | 0.68 | 0.998818 |
Target: 5'- uGCGUggGGuGuCAAuUGggGGCuGUGGg -3' miRNA: 3'- gUGCGuuCC-C-GUUuACuuCUGuUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 1938 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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