miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28903 5' -47 NC_006146.1 + 13311 0.68 0.999492
Target:  5'- cCACGUgcuGGGCAcc--AGGGCGGUGGa -3'
miRNA:   3'- -GUGCGuu-CCCGUuuacUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 98296 0.68 0.998818
Target:  5'- gGCGguGGGGC---UGAGGGCGugcuccGUGGc -3'
miRNA:   3'- gUGCguUCCCGuuuACUUCUGU------UACC- -5'
28903 5' -47 NC_006146.1 + 47062 0.68 0.998818
Target:  5'- -uCGCcggugucggugaGGGGGCGccuGAcGAAGACGGUGGg -3'
miRNA:   3'- guGCG------------UUCCCGU---UUaCUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 89163 0.68 0.999215
Target:  5'- aCGCGCAGGGGa--AUGGAGAgcucaCAGcGGa -3'
miRNA:   3'- -GUGCGUUCCCguuUACUUCU-----GUUaCC- -5'
28903 5' -47 NC_006146.1 + 146152 0.68 0.999492
Target:  5'- gACGCAGGcGGCGGAggcugcuucUGAAuGACGAgcgccUGGa -3'
miRNA:   3'- gUGCGUUC-CCGUUU---------ACUU-CUGUU-----ACC- -5'
28903 5' -47 NC_006146.1 + 32117 0.68 0.998746
Target:  5'- gCACGCAGGGGUgccacgucaccccgGGGUGcugggguGGGgGAUGGg -3'
miRNA:   3'- -GUGCGUUCCCG--------------UUUACu------UCUgUUACC- -5'
28903 5' -47 NC_006146.1 + 135947 0.68 0.998746
Target:  5'- gCACGCAGGGGUgccacgucaccccgGGGUGcugggguGGGgGAUGGg -3'
miRNA:   3'- -GUGCGUUCCCG--------------UUUACu------UCUgUUACC- -5'
28903 5' -47 NC_006146.1 + 10 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 106 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 138 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 1005 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 1037 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 1069 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 2001 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 2870 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 103054 0.68 0.999492
Target:  5'- aGCGCcguguaggAGGGGUAGAUGggGuCAAacucagacuUGGa -3'
miRNA:   3'- gUGCG--------UUCCCGUUUACuuCuGUU---------ACC- -5'
28903 5' -47 NC_006146.1 + 1970 0.69 0.998261
Target:  5'- uCACGCAAGGGUGAuuuAGGAgAggGGu -3'
miRNA:   3'- -GUGCGUUCCCGUUuacUUCUgUuaCC- -5'
28903 5' -47 NC_006146.1 + 129258 0.69 0.998261
Target:  5'- gGCGCGAGGGUcagGGAUGuGGGGC--UGGu -3'
miRNA:   3'- gUGCGUUCCCG---UUUAC-UUCUGuuACC- -5'
28903 5' -47 NC_006146.1 + 50998 0.69 0.998261
Target:  5'- -cCGCAagAGGGCGccacggGggGAgAAUGGg -3'
miRNA:   3'- guGCGU--UCCCGUuua---CuuCUgUUACC- -5'
28903 5' -47 NC_006146.1 + 85562 0.69 0.997908
Target:  5'- aCACGguCGGGGGCAcGUGggGugGcaGGa -3'
miRNA:   3'- -GUGC--GUUCCCGUuUACuuCugUuaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.