Results 81 - 100 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28903 | 5' | -47 | NC_006146.1 | + | 50998 | 0.69 | 0.998261 |
Target: 5'- -cCGCAagAGGGCGccacggGggGAgAAUGGg -3' miRNA: 3'- guGCGU--UCCCGUuua---CuuCUgUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 31942 | 0.69 | 0.997908 |
Target: 5'- gAgGCAagcGGGGCGAguaAUGggGGCuuAGUGGc -3' miRNA: 3'- gUgCGU---UCCCGUU---UACuuCUG--UUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 1970 | 0.69 | 0.998261 |
Target: 5'- uCACGCAAGGGUGAuuuAGGAgAggGGu -3' miRNA: 3'- -GUGCGUUCCCGUUuacUUCUgUuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 146007 | 0.7 | 0.99431 |
Target: 5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3' miRNA: 3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 149085 | 0.7 | 0.99431 |
Target: 5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3' miRNA: 3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 152163 | 0.7 | 0.99431 |
Target: 5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3' miRNA: 3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 142929 | 0.7 | 0.99431 |
Target: 5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3' miRNA: 3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 117820 | 0.7 | 0.996473 |
Target: 5'- gACGgAGGGGaGGA-GGAGGCGGUGGc -3' miRNA: 3'- gUGCgUUCCCgUUUaCUUCUGUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 165744 | 0.7 | 0.99431 |
Target: 5'- --aGCGGGGGUcAggGAGGGgGAUGGg -3' miRNA: 3'- gugCGUUCCCGuUuaCUUCUgUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 68604 | 0.7 | 0.995125 |
Target: 5'- -gUGCAGguGGGCGAucugcugagaaAUGAgcAGACGAUGGg -3' miRNA: 3'- guGCGUU--CCCGUU-----------UACU--UCUGUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 155241 | 0.7 | 0.99431 |
Target: 5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3' miRNA: 3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 158320 | 0.7 | 0.99431 |
Target: 5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3' miRNA: 3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 3777 | 0.7 | 0.995125 |
Target: 5'- cUACGCGGGGGgGGggGggGGgGggGGg -3' miRNA: 3'- -GUGCGUUCCCgUUuaCuuCUgUuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 101936 | 0.7 | 0.995844 |
Target: 5'- -cCGCGGGGGCGgugaccGAUGA-GACAAcGGc -3' miRNA: 3'- guGCGUUCCCGU------UUACUuCUGUUaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 53747 | 0.7 | 0.996473 |
Target: 5'- uGCGCcGGGGCGAAgacGGGCGGcGGg -3' miRNA: 3'- gUGCGuUCCCGUUUacuUCUGUUaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 145407 | 0.7 | 0.995844 |
Target: 5'- gGgGUAGGGGUuguAGcgGAAGGCAAUGa -3' miRNA: 3'- gUgCGUUCCCG---UUuaCUUCUGUUACc -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 148042 | 0.7 | 0.995844 |
Target: 5'- gGCGUuGGGGCccaugauGAUGAGGAgGAUGa -3' miRNA: 3'- gUGCGuUCCCGu------UUACUUCUgUUACc -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 161654 | 0.7 | 0.996473 |
Target: 5'- -uUGCuguGGGC---UGggGACAGUGGu -3' miRNA: 3'- guGCGuu-CCCGuuuACuuCUGUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 158310 | 0.7 | 0.996473 |
Target: 5'- aCAUGCAGauGGGCAgggaGAUGuccuGGAgGAUGGu -3' miRNA: 3'- -GUGCGUU--CCCGU----UUACu---UCUgUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 125787 | 0.7 | 0.995125 |
Target: 5'- aACGCAGGGGaAGAgGAAGGCAcgcGGa -3' miRNA: 3'- gUGCGUUCCCgUUUaCUUCUGUua-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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