miRNA display CGI


Results 21 - 40 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28903 5' -47 NC_006146.1 + 139127 0.73 0.976169
Target:  5'- gCugGCuccgauGGcGCAGGUGggGGCAGUGu -3'
miRNA:   3'- -GugCGuu----CC-CGUUUACuuCUGUUACc -5'
28903 5' -47 NC_006146.1 + 143659 0.73 0.973435
Target:  5'- gGCGC-AGGGCA-----AGGCGAUGGg -3'
miRNA:   3'- gUGCGuUCCCGUuuacuUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 146736 0.73 0.973435
Target:  5'- gGCGC-AGGGCA-----AGGCGAUGGg -3'
miRNA:   3'- gUGCGuUCCCGUuuacuUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 149814 0.73 0.973435
Target:  5'- gGCGC-AGGGCA-----AGGCGAUGGg -3'
miRNA:   3'- gUGCGuUCCCGUuuacuUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 128084 0.73 0.967298
Target:  5'- uCAUGCAggugcgggaGGGGCcGAggcaGggGACAAUGGc -3'
miRNA:   3'- -GUGCGU---------UCCCGuUUa---CuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 90083 0.73 0.973435
Target:  5'- -gUGCAGGGGgGAgcaGUGGAGGCAGcGGa -3'
miRNA:   3'- guGCGUUCCCgUU---UACUUCUGUUaCC- -5'
28903 5' -47 NC_006146.1 + 26816 0.72 0.978691
Target:  5'- gGCGUuGGGGCAGuaacGUGggGAgAAUGa -3'
miRNA:   3'- gUGCGuUCCCGUU----UACuuCUgUUACc -5'
28903 5' -47 NC_006146.1 + 6099 0.72 0.982931
Target:  5'- gACGgAGGaaauggaGGCAAcgGUGGAGGCGGUGGg -3'
miRNA:   3'- gUGCgUUC-------CCGUU--UACUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 111903 0.72 0.983135
Target:  5'- aGCGCGGGaGGCAGAUGuuGGCcagguugcaGGUGGc -3'
miRNA:   3'- gUGCGUUC-CCGUUUACuuCUG---------UUACC- -5'
28903 5' -47 NC_006146.1 + 24181 0.72 0.98684
Target:  5'- gCACGUGgacAGGGCAGAgGAGGGC--UGGg -3'
miRNA:   3'- -GUGCGU---UCCCGUUUaCUUCUGuuACC- -5'
28903 5' -47 NC_006146.1 + 133820 0.72 0.98101
Target:  5'- uGCuCAGGGGaggGGGUGAGGAUggUGGg -3'
miRNA:   3'- gUGcGUUCCCg--UUUACUUCUGuuACC- -5'
28903 5' -47 NC_006146.1 + 58102 0.72 0.983135
Target:  5'- gUACGUggGGcGCAAcgGGAGGCAGg-- -3'
miRNA:   3'- -GUGCGuuCC-CGUUuaCUUCUGUUacc -5'
28903 5' -47 NC_006146.1 + 90197 0.72 0.9865
Target:  5'- -gUGCAgGGGGCAGAgggggaagaggaGGAGGCGGUGGa -3'
miRNA:   3'- guGCGU-UCCCGUUUa-----------CUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 108612 0.72 0.98684
Target:  5'- cCAgGUAGGGGUccgcGGAGGCGGUGGu -3'
miRNA:   3'- -GUgCGUUCCCGuuuaCUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 5831 0.72 0.98684
Target:  5'- gAgGCAAuGG-AGAUGGAGGCAAUGGa -3'
miRNA:   3'- gUgCGUUcCCgUUUACUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 150512 0.71 0.989885
Target:  5'- gACGUguGGGCGAGguuUGggGGCGGcUGGg -3'
miRNA:   3'- gUGCGuuCCCGUUU---ACuuCUGUU-ACC- -5'
28903 5' -47 NC_006146.1 + 59582 0.71 0.993387
Target:  5'- gGCGCAGGuGGCGAucugGAGGGCGGc-- -3'
miRNA:   3'- gUGCGUUC-CCGUUua--CUUCUGUUacc -5'
28903 5' -47 NC_006146.1 + 140077 0.71 0.991184
Target:  5'- ---aCAGGGGguGGUGGAGGgGGUGGa -3'
miRNA:   3'- gugcGUUCCCguUUACUUCUgUUACC- -5'
28903 5' -47 NC_006146.1 + 153590 0.71 0.989885
Target:  5'- gACGUguGGGCGAGguuUGggGGCGGcUGGg -3'
miRNA:   3'- gUGCGuuCCCGUUU---ACuuCUGUU-ACC- -5'
28903 5' -47 NC_006146.1 + 147434 0.71 0.989885
Target:  5'- gACGUguGGGCGAGguuUGggGGCGGcUGGg -3'
miRNA:   3'- gUGCGuuCCCGUUU---ACuuCUGUU-ACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.