Results 61 - 80 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28903 | 5' | -47 | NC_006146.1 | + | 158320 | 0.7 | 0.99431 |
Target: 5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3' miRNA: 3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 142929 | 0.7 | 0.99431 |
Target: 5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3' miRNA: 3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 117820 | 0.7 | 0.996473 |
Target: 5'- gACGgAGGGGaGGA-GGAGGCGGUGGc -3' miRNA: 3'- gUGCgUUCCCgUUUaCUUCUGUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 50998 | 0.69 | 0.998261 |
Target: 5'- -cCGCAagAGGGCGccacggGggGAgAAUGGg -3' miRNA: 3'- guGCGU--UCCCGUuua---CuuCUgUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 31942 | 0.69 | 0.997908 |
Target: 5'- gAgGCAagcGGGGCGAguaAUGggGGCuuAGUGGc -3' miRNA: 3'- gUgCGU---UCCCGUU---UACuuCUG--UUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 1970 | 0.69 | 0.998261 |
Target: 5'- uCACGCAAGGGUGAuuuAGGAgAggGGu -3' miRNA: 3'- -GUGCGUUCCCGUUuacUUCUgUuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 44525 | 0.69 | 0.997497 |
Target: 5'- uCAgGCugacGGGCg---GAGGACGGUGGg -3' miRNA: 3'- -GUgCGuu--CCCGuuuaCUUCUGUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 85562 | 0.69 | 0.997908 |
Target: 5'- aCACGguCGGGGGCAcGUGggGugGcaGGa -3' miRNA: 3'- -GUGC--GUUCCCGUuUACuuCugUuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 129258 | 0.69 | 0.998261 |
Target: 5'- gGCGCGAGGGUcagGGAUGuGGGGC--UGGu -3' miRNA: 3'- gUGCGUUCCCG---UUUAC-UUCUGuuACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 89817 | 0.69 | 0.998562 |
Target: 5'- gAgGCGGGGGCGug-GAGGugGA-GGa -3' miRNA: 3'- gUgCGUUCCCGUuuaCUUCugUUaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 72008 | 0.68 | 0.998818 |
Target: 5'- cCugGCGcGGGUGAGUagcgggGGAGugGGUGGu -3' miRNA: 3'- -GugCGUuCCCGUUUA------CUUCugUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 2934 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 2902 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 2870 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 2001 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 69417 | 0.68 | 0.999034 |
Target: 5'- gACGagcAGGGCcaccgagcacaGGAUGggGAUGAUGGc -3' miRNA: 3'- gUGCgu-UCCCG-----------UUUACuuCUGUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 13311 | 0.68 | 0.999492 |
Target: 5'- cCACGUgcuGGGCAcc--AGGGCGGUGGa -3' miRNA: 3'- -GUGCGuu-CCCGUuuacUUCUGUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 1938 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 94992 | 0.68 | 0.999034 |
Target: 5'- cCAgGCAuggGGGGCAGcUGAGGAgGugcUGGa -3' miRNA: 3'- -GUgCGU---UCCCGUUuACUUCUgUu--ACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 74 | 0.68 | 0.999492 |
Target: 5'- uCACGCAAGGGUGAuuucGggGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CuuCUguuaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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