miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28903 5' -47 NC_006146.1 + 144356 0.71 0.989885
Target:  5'- gACGUguGGGCGAGguuUGggGGCGGcUGGg -3'
miRNA:   3'- gUGCGuuCCCGUUU---ACuuCUGUU-ACC- -5'
28903 5' -47 NC_006146.1 + 140077 0.71 0.991184
Target:  5'- ---aCAGGGGguGGUGGAGGgGGUGGa -3'
miRNA:   3'- gugcGUUCCCguUUACUUCUgUUACC- -5'
28903 5' -47 NC_006146.1 + 166870 0.71 0.992349
Target:  5'- gGCGgGAGGGgGGAgcgGAGGGCGA-GGa -3'
miRNA:   3'- gUGCgUUCCCgUUUa--CUUCUGUUaCC- -5'
28903 5' -47 NC_006146.1 + 156287 0.71 0.992349
Target:  5'- cCACGCAgcgccagcAGGGCAcagaGGUGAuguagAGGCGcgGGu -3'
miRNA:   3'- -GUGCGU--------UCCCGU----UUACU-----UCUGUuaCC- -5'
28903 5' -47 NC_006146.1 + 155895 0.71 0.993387
Target:  5'- cCugGCAaacAGGGCAGA--GAGACGggaAUGGc -3'
miRNA:   3'- -GugCGU---UCCCGUUUacUUCUGU---UACC- -5'
28903 5' -47 NC_006146.1 + 59582 0.71 0.993387
Target:  5'- gGCGCAGGuGGCGAucugGAGGGCGGc-- -3'
miRNA:   3'- gUGCGUUC-CCGUUua--CUUCUGUUacc -5'
28903 5' -47 NC_006146.1 + 158320 0.7 0.99431
Target:  5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3'
miRNA:   3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 165744 0.7 0.99431
Target:  5'- --aGCGGGGGUcAggGAGGGgGAUGGg -3'
miRNA:   3'- gugCGUUCCCGuUuaCUUCUgUUACC- -5'
28903 5' -47 NC_006146.1 + 142929 0.7 0.99431
Target:  5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3'
miRNA:   3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 146007 0.7 0.99431
Target:  5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3'
miRNA:   3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 149085 0.7 0.99431
Target:  5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3'
miRNA:   3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 152163 0.7 0.99431
Target:  5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3'
miRNA:   3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 155241 0.7 0.99431
Target:  5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3'
miRNA:   3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 3777 0.7 0.995125
Target:  5'- cUACGCGGGGGgGGggGggGGgGggGGg -3'
miRNA:   3'- -GUGCGUUCCCgUUuaCuuCUgUuaCC- -5'
28903 5' -47 NC_006146.1 + 68604 0.7 0.995125
Target:  5'- -gUGCAGguGGGCGAucugcugagaaAUGAgcAGACGAUGGg -3'
miRNA:   3'- guGCGUU--CCCGUU-----------UACU--UCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 125787 0.7 0.995125
Target:  5'- aACGCAGGGGaAGAgGAAGGCAcgcGGa -3'
miRNA:   3'- gUGCGUUCCCgUUUaCUUCUGUua-CC- -5'
28903 5' -47 NC_006146.1 + 145407 0.7 0.995844
Target:  5'- gGgGUAGGGGUuguAGcgGAAGGCAAUGa -3'
miRNA:   3'- gUgCGUUCCCG---UUuaCUUCUGUUACc -5'
28903 5' -47 NC_006146.1 + 101936 0.7 0.995844
Target:  5'- -cCGCGGGGGCGgugaccGAUGA-GACAAcGGc -3'
miRNA:   3'- guGCGUUCCCGU------UUACUuCUGUUaCC- -5'
28903 5' -47 NC_006146.1 + 148042 0.7 0.995844
Target:  5'- gGCGUuGGGGCccaugauGAUGAGGAgGAUGa -3'
miRNA:   3'- gUGCGuUCCCGu------UUACUUCUgUUACc -5'
28903 5' -47 NC_006146.1 + 117820 0.7 0.996473
Target:  5'- gACGgAGGGGaGGA-GGAGGCGGUGGc -3'
miRNA:   3'- gUGCgUUCCCgUUUaCUUCUGUUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.