miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28903 5' -47 NC_006146.1 + 158310 0.7 0.996473
Target:  5'- aCAUGCAGauGGGCAgggaGAUGuccuGGAgGAUGGu -3'
miRNA:   3'- -GUGCGUU--CCCGU----UUACu---UCUgUUACC- -5'
28903 5' -47 NC_006146.1 + 161654 0.7 0.996473
Target:  5'- -uUGCuguGGGC---UGggGACAGUGGu -3'
miRNA:   3'- guGCGuu-CCCGuuuACuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 117820 0.7 0.996473
Target:  5'- gACGgAGGGGaGGA-GGAGGCGGUGGc -3'
miRNA:   3'- gUGCgUUCCCgUUUaCUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 44525 0.69 0.997497
Target:  5'- uCAgGCugacGGGCg---GAGGACGGUGGg -3'
miRNA:   3'- -GUgCGuu--CCCGuuuaCUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 31942 0.69 0.997908
Target:  5'- gAgGCAagcGGGGCGAguaAUGggGGCuuAGUGGc -3'
miRNA:   3'- gUgCGU---UCCCGUU---UACuuCUG--UUACC- -5'
28903 5' -47 NC_006146.1 + 85562 0.69 0.997908
Target:  5'- aCACGguCGGGGGCAcGUGggGugGcaGGa -3'
miRNA:   3'- -GUGC--GUUCCCGUuUACuuCugUuaCC- -5'
28903 5' -47 NC_006146.1 + 129258 0.69 0.998261
Target:  5'- gGCGCGAGGGUcagGGAUGuGGGGC--UGGu -3'
miRNA:   3'- gUGCGUUCCCG---UUUAC-UUCUGuuACC- -5'
28903 5' -47 NC_006146.1 + 1970 0.69 0.998261
Target:  5'- uCACGCAAGGGUGAuuuAGGAgAggGGu -3'
miRNA:   3'- -GUGCGUUCCCGUUuacUUCUgUuaCC- -5'
28903 5' -47 NC_006146.1 + 50998 0.69 0.998261
Target:  5'- -cCGCAagAGGGCGccacggGggGAgAAUGGg -3'
miRNA:   3'- guGCGU--UCCCGUuua---CuuCUgUUACC- -5'
28903 5' -47 NC_006146.1 + 89817 0.69 0.998562
Target:  5'- gAgGCGGGGGCGug-GAGGugGA-GGa -3'
miRNA:   3'- gUgCGUUCCCGUuuaCUUCugUUaCC- -5'
28903 5' -47 NC_006146.1 + 135947 0.68 0.998746
Target:  5'- gCACGCAGGGGUgccacgucaccccgGGGUGcugggguGGGgGAUGGg -3'
miRNA:   3'- -GUGCGUUCCCG--------------UUUACu------UCUgUUACC- -5'
28903 5' -47 NC_006146.1 + 32117 0.68 0.998746
Target:  5'- gCACGCAGGGGUgccacgucaccccgGGGUGcugggguGGGgGAUGGg -3'
miRNA:   3'- -GUGCGUUCCCG--------------UUUACu------UCUgUUACC- -5'
28903 5' -47 NC_006146.1 + 1938 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 10 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 72008 0.68 0.998818
Target:  5'- cCugGCGcGGGUGAGUagcgggGGAGugGGUGGu -3'
miRNA:   3'- -GugCGUuCCCGUUUA------CUUCugUUACC- -5'
28903 5' -47 NC_006146.1 + 2934 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 2902 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 2870 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 2001 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 106 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.