miRNA display CGI


Results 41 - 60 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28903 5' -47 NC_006146.1 + 54364 0.67 0.999848
Target:  5'- --aGCAGGGaaaaGAGUGAggugggccAGACGAUGGg -3'
miRNA:   3'- gugCGUUCCcg--UUUACU--------UCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 87178 0.67 0.999772
Target:  5'- cCugGCAuacuauuugccacccAGGGUGAGagGAGGACAGgUGGc -3'
miRNA:   3'- -GugCGU---------------UCCCGUUUa-CUUCUGUU-ACC- -5'
28903 5' -47 NC_006146.1 + 162065 0.67 0.999748
Target:  5'- -cCGCGGGGGUggGUGAAuGuCGcGUGGc -3'
miRNA:   3'- guGCGUUCCCGuuUACUU-CuGU-UACC- -5'
28903 5' -47 NC_006146.1 + 137840 0.67 0.999748
Target:  5'- aAgGCAGGGGgGcucGggGugGGUGGg -3'
miRNA:   3'- gUgCGUUCCCgUuuaCuuCugUUACC- -5'
28903 5' -47 NC_006146.1 + 126716 0.67 0.999748
Target:  5'- -uCGCAGGGcGCAGAggcugGAGGGCAc--- -3'
miRNA:   3'- guGCGUUCC-CGUUUa----CUUCUGUuacc -5'
28903 5' -47 NC_006146.1 + 71410 0.67 0.999595
Target:  5'- -uUGCAuuuuGGGCAGGU-AGGAUGGUGGu -3'
miRNA:   3'- guGCGUu---CCCGUUUAcUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 159830 0.67 0.999595
Target:  5'- uCGCgGguGGGGCAAccuGUGGgcgGGugGGUGGu -3'
miRNA:   3'- -GUG-CguUCCCGUU---UACU---UCugUUACC- -5'
28903 5' -47 NC_006146.1 + 122709 0.67 0.999595
Target:  5'- --aGCAAGGGCAAAagccgcaaGAAGACAc--- -3'
miRNA:   3'- gugCGUUCCCGUUUa-------CUUCUGUuacc -5'
28903 5' -47 NC_006146.1 + 116350 0.67 0.999595
Target:  5'- cCACGguGGGGCGGAgaucGGAGAucuCAA-GGa -3'
miRNA:   3'- -GUGCguUCCCGUUUa---CUUCU---GUUaCC- -5'
28903 5' -47 NC_006146.1 + 101859 0.67 0.999595
Target:  5'- -cCGCAccacgGGuGGCGGGgcGAGGACGGUGGc -3'
miRNA:   3'- guGCGU-----UC-CCGUUUa-CUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 57292 0.67 0.999595
Target:  5'- aGCGCcGGGGCAGGcgacGGAGAgAcUGGc -3'
miRNA:   3'- gUGCGuUCCCGUUUa---CUUCUgUuACC- -5'
28903 5' -47 NC_006146.1 + 74 0.68 0.999492
Target:  5'- uCACGCAAGGGUGAuuucGggGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CuuCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 103054 0.68 0.999492
Target:  5'- aGCGCcguguaggAGGGGUAGAUGggGuCAAacucagacuUGGa -3'
miRNA:   3'- gUGCG--------UUCCCGUUUACuuCuGUU---------ACC- -5'
28903 5' -47 NC_006146.1 + 146152 0.68 0.999492
Target:  5'- gACGCAGGcGGCGGAggcugcuucUGAAuGACGAgcgccUGGa -3'
miRNA:   3'- gUGCGUUC-CCGUUU---------ACUU-CUGUU-----ACC- -5'
28903 5' -47 NC_006146.1 + 85612 0.68 0.999492
Target:  5'- gCugGCAccGGGGCAAagGGccagagaggcAGACAggGGc -3'
miRNA:   3'- -GugCGU--UCCCGUUuaCU----------UCUGUuaCC- -5'
28903 5' -47 NC_006146.1 + 13311 0.68 0.999492
Target:  5'- cCACGUgcuGGGCAcc--AGGGCGGUGGa -3'
miRNA:   3'- -GUGCGuu-CCCGUuuacUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 89163 0.68 0.999215
Target:  5'- aCGCGCAGGGGa--AUGGAGAgcucaCAGcGGa -3'
miRNA:   3'- -GUGCGUUCCCguuUACUUCU-----GUUaCC- -5'
28903 5' -47 NC_006146.1 + 94992 0.68 0.999034
Target:  5'- cCAgGCAuggGGGGCAGcUGAGGAgGugcUGGa -3'
miRNA:   3'- -GUgCGU---UCCCGUUuACUUCUgUu--ACC- -5'
28903 5' -47 NC_006146.1 + 69417 0.68 0.999034
Target:  5'- gACGagcAGGGCcaccgagcacaGGAUGggGAUGAUGGc -3'
miRNA:   3'- gUGCgu-UCCCG-----------UUUACuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 2001 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.