Results 61 - 80 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28903 | 5' | -47 | NC_006146.1 | + | 2870 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 1938 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 2902 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 2934 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 72008 | 0.68 | 0.998818 |
Target: 5'- cCugGCGcGGGUGAGUagcgggGGAGugGGUGGu -3' miRNA: 3'- -GugCGUuCCCGUUUA------CUUCugUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 1037 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 1005 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 139114 | 0.68 | 0.998818 |
Target: 5'- uGCGUggGGuGuCAAuUGggGGCuGUGGg -3' miRNA: 3'- gUGCGuuCC-C-GUUuACuuCUGuUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 10 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 106 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 138 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 98296 | 0.68 | 0.998818 |
Target: 5'- gGCGguGGGGC---UGAGGGCGugcuccGUGGc -3' miRNA: 3'- gUGCguUCCCGuuuACUUCUGU------UACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 47062 | 0.68 | 0.998818 |
Target: 5'- -uCGCcggugucggugaGGGGGCGccuGAcGAAGACGGUGGg -3' miRNA: 3'- guGCG------------UUCCCGU---UUaCUUCUGUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 1069 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 135947 | 0.68 | 0.998746 |
Target: 5'- gCACGCAGGGGUgccacgucaccccgGGGUGcugggguGGGgGAUGGg -3' miRNA: 3'- -GUGCGUUCCCG--------------UUUACu------UCUgUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 32117 | 0.68 | 0.998746 |
Target: 5'- gCACGCAGGGGUgccacgucaccccgGGGUGcugggguGGGgGAUGGg -3' miRNA: 3'- -GUGCGUUCCCG--------------UUUACu------UCUgUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 89817 | 0.69 | 0.998562 |
Target: 5'- gAgGCGGGGGCGug-GAGGugGA-GGa -3' miRNA: 3'- gUgCGUUCCCGUuuaCUUCugUUaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 129258 | 0.69 | 0.998261 |
Target: 5'- gGCGCGAGGGUcagGGAUGuGGGGC--UGGu -3' miRNA: 3'- gUGCGUUCCCG---UUUAC-UUCUGuuACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 1970 | 0.69 | 0.998261 |
Target: 5'- uCACGCAAGGGUGAuuuAGGAgAggGGu -3' miRNA: 3'- -GUGCGUUCCCGUUuacUUCUgUuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 50998 | 0.69 | 0.998261 |
Target: 5'- -cCGCAagAGGGCGccacggGggGAgAAUGGg -3' miRNA: 3'- guGCGU--UCCCGUuua---CuuCUgUUACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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