miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28903 5' -47 NC_006146.1 + 50998 0.69 0.998261
Target:  5'- -cCGCAagAGGGCGccacggGggGAgAAUGGg -3'
miRNA:   3'- guGCGU--UCCCGUuua---CuuCUgUUACC- -5'
28903 5' -47 NC_006146.1 + 52406 0.66 0.999911
Target:  5'- gUACGUggGGGCc-GUcAAGACcGUGGc -3'
miRNA:   3'- -GUGCGuuCCCGuuUAcUUCUGuUACC- -5'
28903 5' -47 NC_006146.1 + 53747 0.7 0.996473
Target:  5'- uGCGCcGGGGCGAAgacGGGCGGcGGg -3'
miRNA:   3'- gUGCGuUCCCGUUUacuUCUGUUaCC- -5'
28903 5' -47 NC_006146.1 + 53951 0.67 0.999848
Target:  5'- gACGCAGGGGCucAcgGGcguuuucccacAGGgGGUGGu -3'
miRNA:   3'- gUGCGUUCCCGu-UuaCU-----------UCUgUUACC- -5'
28903 5' -47 NC_006146.1 + 54029 0.74 0.952149
Target:  5'- gGCGCcuccgGAGGGCGGccAUGucGGCGGUGGu -3'
miRNA:   3'- gUGCG-----UUCCCGUU--UACuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 54364 0.67 0.999848
Target:  5'- --aGCAGGGaaaaGAGUGAggugggccAGACGAUGGg -3'
miRNA:   3'- gugCGUUCCcg--UUUACU--------UCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 57292 0.67 0.999595
Target:  5'- aGCGCcGGGGCAGGcgacGGAGAgAcUGGc -3'
miRNA:   3'- gUGCGuUCCCGUUUa---CUUCUgUuACC- -5'
28903 5' -47 NC_006146.1 + 58102 0.72 0.983135
Target:  5'- gUACGUggGGcGCAAcgGGAGGCAGg-- -3'
miRNA:   3'- -GUGCGuuCC-CGUUuaCUUCUGUUacc -5'
28903 5' -47 NC_006146.1 + 58951 0.65 0.999959
Target:  5'- uGCGCuGAGGuGCugcagcccucgagGGAGACGGUGGc -3'
miRNA:   3'- gUGCG-UUCC-CGuuua---------CUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 59444 0.84 0.564041
Target:  5'- gGCGCAgggcagGGGGCAggacuccccgauGAUGGAGGCAAUGGc -3'
miRNA:   3'- gUGCGU------UCCCGU------------UUACUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 59582 0.71 0.993387
Target:  5'- gGCGCAGGuGGCGAucugGAGGGCGGc-- -3'
miRNA:   3'- gUGCGUUC-CCGUUua--CUUCUGUUacc -5'
28903 5' -47 NC_006146.1 + 61667 0.73 0.967298
Target:  5'- aACGCAGGaGGUGGAgagagGggGGCAcgGGu -3'
miRNA:   3'- gUGCGUUC-CCGUUUa----CuuCUGUuaCC- -5'
28903 5' -47 NC_006146.1 + 61815 0.78 0.823696
Target:  5'- --aGCAacauuaGGGGCGcuGGUGggGGCAGUGGg -3'
miRNA:   3'- gugCGU------UCCCGU--UUACuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 64344 0.66 0.999911
Target:  5'- --aGCAuuGGGCAAuauaaauuacUGGAGugGAUGGu -3'
miRNA:   3'- gugCGUu-CCCGUUu---------ACUUCugUUACC- -5'
28903 5' -47 NC_006146.1 + 68604 0.7 0.995125
Target:  5'- -gUGCAGguGGGCGAucugcugagaaAUGAgcAGACGAUGGg -3'
miRNA:   3'- guGCGUU--CCCGUU-----------UACU--UCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 69417 0.68 0.999034
Target:  5'- gACGagcAGGGCcaccgagcacaGGAUGggGAUGAUGGc -3'
miRNA:   3'- gUGCgu-UCCCG-----------UUUACuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 69513 0.81 0.682859
Target:  5'- aAC-CAGGGGCAGaAUGAGGAUGAUGGa -3'
miRNA:   3'- gUGcGUUCCCGUU-UACUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 71410 0.67 0.999595
Target:  5'- -uUGCAuuuuGGGCAGGU-AGGAUGGUGGu -3'
miRNA:   3'- guGCGUu---CCCGUUUAcUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 71653 0.66 0.999883
Target:  5'- gGCgGCGAGGGaaggaaGAAgcccGAGACGGUGGu -3'
miRNA:   3'- gUG-CGUUCCCg-----UUUac--UUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 71789 0.66 0.999949
Target:  5'- gGCGUuAGGGCuuGUGGcuccCGAUGGg -3'
miRNA:   3'- gUGCGuUCCCGuuUACUucu-GUUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.