miRNA display CGI


Results 61 - 80 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28903 5' -47 NC_006146.1 + 72008 0.68 0.998818
Target:  5'- cCugGCGcGGGUGAGUagcgggGGAGugGGUGGu -3'
miRNA:   3'- -GugCGUuCCCGUUUA------CUUCugUUACC- -5'
28903 5' -47 NC_006146.1 + 85562 0.69 0.997908
Target:  5'- aCACGguCGGGGGCAcGUGggGugGcaGGa -3'
miRNA:   3'- -GUGC--GUUCCCGUuUACuuCugUuaCC- -5'
28903 5' -47 NC_006146.1 + 85612 0.68 0.999492
Target:  5'- gCugGCAccGGGGCAAagGGccagagaggcAGACAggGGc -3'
miRNA:   3'- -GugCGU--UCCCGUUuaCU----------UCUGUuaCC- -5'
28903 5' -47 NC_006146.1 + 87178 0.67 0.999772
Target:  5'- cCugGCAuacuauuugccacccAGGGUGAGagGAGGACAGgUGGc -3'
miRNA:   3'- -GugCGU---------------UCCCGUUUa-CUUCUGUU-ACC- -5'
28903 5' -47 NC_006146.1 + 88145 0.66 0.999911
Target:  5'- gGCGCAaaGGGGCuucacGAGGuguagauaACAAUGGc -3'
miRNA:   3'- gUGCGU--UCCCGuuua-CUUC--------UGUUACC- -5'
28903 5' -47 NC_006146.1 + 89163 0.68 0.999215
Target:  5'- aCGCGCAGGGGa--AUGGAGAgcucaCAGcGGa -3'
miRNA:   3'- -GUGCGUUCCCguuUACUUCU-----GUUaCC- -5'
28903 5' -47 NC_006146.1 + 89817 0.69 0.998562
Target:  5'- gAgGCGGGGGCGug-GAGGugGA-GGa -3'
miRNA:   3'- gUgCGUUCCCGUuuaCUUCugUUaCC- -5'
28903 5' -47 NC_006146.1 + 90083 0.73 0.973435
Target:  5'- -gUGCAGGGGgGAgcaGUGGAGGCAGcGGa -3'
miRNA:   3'- guGCGUUCCCgUU---UACUUCUGUUaCC- -5'
28903 5' -47 NC_006146.1 + 90197 0.72 0.9865
Target:  5'- -gUGCAgGGGGCAGAgggggaagaggaGGAGGCGGUGGa -3'
miRNA:   3'- guGCGU-UCCCGUUUa-----------CUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 92644 0.75 0.921655
Target:  5'- aACGCAGGGaGCAGcucuuGUGGccauuggacgGGGCAGUGGg -3'
miRNA:   3'- gUGCGUUCC-CGUU-----UACU----------UCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 94992 0.68 0.999034
Target:  5'- cCAgGCAuggGGGGCAGcUGAGGAgGugcUGGa -3'
miRNA:   3'- -GUgCGU---UCCCGUUuACUUCUgUu--ACC- -5'
28903 5' -47 NC_006146.1 + 96670 0.66 0.99992
Target:  5'- cCGCGC-AGGGCc--UGAAGAagaaggucuccagcaCGGUGGu -3'
miRNA:   3'- -GUGCGuUCCCGuuuACUUCU---------------GUUACC- -5'
28903 5' -47 NC_006146.1 + 98296 0.68 0.998818
Target:  5'- gGCGguGGGGC---UGAGGGCGugcuccGUGGc -3'
miRNA:   3'- gUGCguUCCCGuuuACUUCUGU------UACC- -5'
28903 5' -47 NC_006146.1 + 100251 0.77 0.881586
Target:  5'- gCugGCGGGGuGUGAgcggcucugGUGggGGCAAUGGg -3'
miRNA:   3'- -GugCGUUCC-CGUU---------UACuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 100257 0.66 0.999948
Target:  5'- uCACGCAcgGGGGCuccAUGGAGccuccuaGCGggGGc -3'
miRNA:   3'- -GUGCGU--UCCCGuu-UACUUC-------UGUuaCC- -5'
28903 5' -47 NC_006146.1 + 101536 0.66 0.999927
Target:  5'- uGCGCcAGGGCAcugacuacguccccAucuccGAGACGGUGGa -3'
miRNA:   3'- gUGCGuUCCCGU--------------Uuac--UUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 101859 0.67 0.999595
Target:  5'- -cCGCAccacgGGuGGCGGGgcGAGGACGGUGGc -3'
miRNA:   3'- guGCGU-----UC-CCGUUUa-CUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 101936 0.7 0.995844
Target:  5'- -cCGCGGGGGCGgugaccGAUGA-GACAAcGGc -3'
miRNA:   3'- guGCGUUCCCGU------UUACUuCUGUUaCC- -5'
28903 5' -47 NC_006146.1 + 103054 0.68 0.999492
Target:  5'- aGCGCcguguaggAGGGGUAGAUGggGuCAAacucagacuUGGa -3'
miRNA:   3'- gUGCG--------UUCCCGUUUACuuCuGUU---------ACC- -5'
28903 5' -47 NC_006146.1 + 106989 0.71 0.989747
Target:  5'- gGCaCAAGGGUgccucguGGAUGA-GACAAUGGa -3'
miRNA:   3'- gUGcGUUCCCG-------UUUACUuCUGUUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.