Results 81 - 100 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28903 | 5' | -47 | NC_006146.1 | + | 108612 | 0.72 | 0.98684 |
Target: 5'- cCAgGUAGGGGUccgcGGAGGCGGUGGu -3' miRNA: 3'- -GUgCGUUCCCGuuuaCUUCUGUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 111344 | 0.66 | 0.999883 |
Target: 5'- gGCGCAAcccgagguGGGCAucagGgcGACAAacUGGg -3' miRNA: 3'- gUGCGUU--------CCCGUuua-CuuCUGUU--ACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 111903 | 0.72 | 0.983135 |
Target: 5'- aGCGCGGGaGGCAGAUGuuGGCcagguugcaGGUGGc -3' miRNA: 3'- gUGCGUUC-CCGUUUACuuCUG---------UUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 115547 | 0.66 | 0.999949 |
Target: 5'- gCGCGCGGuGGCGGGggcUGGAGGCGAc-- -3' miRNA: 3'- -GUGCGUUcCCGUUU---ACUUCUGUUacc -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 116286 | 0.66 | 0.999932 |
Target: 5'- aCGCGCAccgcacGGGUGAAUGuGGGGCAGgucaGGa -3' miRNA: 3'- -GUGCGUu-----CCCGUUUAC-UUCUGUUa---CC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 116349 | 0.66 | 0.999911 |
Target: 5'- gGCG-AAGGGaCGGAaGGAGGCGAgagGGg -3' miRNA: 3'- gUGCgUUCCC-GUUUaCUUCUGUUa--CC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 116350 | 0.67 | 0.999595 |
Target: 5'- cCACGguGGGGCGGAgaucGGAGAucuCAA-GGa -3' miRNA: 3'- -GUGCguUCCCGUUUa---CUUCU---GUUaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 116797 | 0.66 | 0.999932 |
Target: 5'- gACGCucAAGGGCGuggugGAGGGCGuccaGGa -3' miRNA: 3'- gUGCG--UUCCCGUuua--CUUCUGUua--CC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 116973 | 0.66 | 0.999911 |
Target: 5'- cCAUGUGAcGGCAGAUGAAcuuGAUcAUGGa -3' miRNA: 3'- -GUGCGUUcCCGUUUACUU---CUGuUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 117820 | 0.7 | 0.996473 |
Target: 5'- gACGgAGGGGaGGA-GGAGGCGGUGGc -3' miRNA: 3'- gUGCgUUCCCgUUUaCUUCUGUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 122615 | 0.66 | 0.999911 |
Target: 5'- gGCG-AGGGGCGGA-GGAGGCcg-GGg -3' miRNA: 3'- gUGCgUUCCCGUUUaCUUCUGuuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 122709 | 0.67 | 0.999595 |
Target: 5'- --aGCAAGGGCAAAagccgcaaGAAGACAc--- -3' miRNA: 3'- gugCGUUCCCGUUUa-------CUUCUGUuacc -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 125787 | 0.7 | 0.995125 |
Target: 5'- aACGCAGGGGaAGAgGAAGGCAcgcGGa -3' miRNA: 3'- gUGCGUUCCCgUUUaCUUCUGUua-CC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 125995 | 0.75 | 0.938101 |
Target: 5'- gGCuGCGAGGcuuGgGAGUGggGGCGGUGGg -3' miRNA: 3'- gUG-CGUUCC---CgUUUACuuCUGUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 126652 | 0.66 | 0.999911 |
Target: 5'- -cCGCAGGGGCAAu---GGACAc--- -3' miRNA: 3'- guGCGUUCCCGUUuacuUCUGUuacc -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 126716 | 0.67 | 0.999748 |
Target: 5'- -uCGCAGGGcGCAGAggcugGAGGGCAc--- -3' miRNA: 3'- guGCGUUCC-CGUUUa----CUUCUGUuacc -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 128084 | 0.73 | 0.967298 |
Target: 5'- uCAUGCAggugcgggaGGGGCcGAggcaGggGACAAUGGc -3' miRNA: 3'- -GUGCGU---------UCCCGuUUa---CuuCUGUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 129258 | 0.69 | 0.998261 |
Target: 5'- gGCGCGAGGGUcagGGAUGuGGGGC--UGGu -3' miRNA: 3'- gUGCGUUCCCG---UUUAC-UUCUGuuACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 133820 | 0.72 | 0.98101 |
Target: 5'- uGCuCAGGGGaggGGGUGAGGAUggUGGg -3' miRNA: 3'- gUGcGUUCCCg--UUUACUUCUGuuACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 135947 | 0.68 | 0.998746 |
Target: 5'- gCACGCAGGGGUgccacgucaccccgGGGUGcugggguGGGgGAUGGg -3' miRNA: 3'- -GUGCGUUCCCG--------------UUUACu------UCUgUUACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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