miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28903 5' -47 NC_006146.1 + 155895 0.71 0.993387
Target:  5'- cCugGCAaacAGGGCAGA--GAGACGggaAUGGc -3'
miRNA:   3'- -GugCGU---UCCCGUUUacUUCUGU---UACC- -5'
28903 5' -47 NC_006146.1 + 155241 0.7 0.99431
Target:  5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3'
miRNA:   3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 153590 0.71 0.989885
Target:  5'- gACGUguGGGCGAGguuUGggGGCGGcUGGg -3'
miRNA:   3'- gUGCGuuCCCGUUU---ACuuCUGUU-ACC- -5'
28903 5' -47 NC_006146.1 + 152892 0.73 0.973435
Target:  5'- gGCGC-AGGGCA-----AGGCGAUGGg -3'
miRNA:   3'- gUGCGuUCCCGUuuacuUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 152163 0.7 0.99431
Target:  5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3'
miRNA:   3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 150512 0.71 0.989885
Target:  5'- gACGUguGGGCGAGguuUGggGGCGGcUGGg -3'
miRNA:   3'- gUGCGuuCCCGUUU---ACuuCUGUU-ACC- -5'
28903 5' -47 NC_006146.1 + 150462 0.66 0.999932
Target:  5'- --gGaCAGGGGCug--GAuGACAGUGGc -3'
miRNA:   3'- gugC-GUUCCCGuuuaCUuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 149814 0.73 0.973435
Target:  5'- gGCGC-AGGGCA-----AGGCGAUGGg -3'
miRNA:   3'- gUGCGuUCCCGUuuacuUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 149085 0.7 0.99431
Target:  5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3'
miRNA:   3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 148042 0.7 0.995844
Target:  5'- gGCGUuGGGGCccaugauGAUGAGGAgGAUGa -3'
miRNA:   3'- gUGCGuUCCCGu------UUACUUCUgUUACc -5'
28903 5' -47 NC_006146.1 + 147832 0.66 0.999911
Target:  5'- gGCGCAGauGaGGCcGGUGAAGGCGAc-- -3'
miRNA:   3'- gUGCGUU--C-CCGuUUACUUCUGUUacc -5'
28903 5' -47 NC_006146.1 + 147434 0.71 0.989885
Target:  5'- gACGUguGGGCGAGguuUGggGGCGGcUGGg -3'
miRNA:   3'- gUGCGuuCCCGUUU---ACuuCUGUU-ACC- -5'
28903 5' -47 NC_006146.1 + 146736 0.73 0.973435
Target:  5'- gGCGC-AGGGCA-----AGGCGAUGGg -3'
miRNA:   3'- gUGCGuUCCCGUuuacuUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 146152 0.68 0.999492
Target:  5'- gACGCAGGcGGCGGAggcugcuucUGAAuGACGAgcgccUGGa -3'
miRNA:   3'- gUGCGUUC-CCGUUU---------ACUU-CUGUU-----ACC- -5'
28903 5' -47 NC_006146.1 + 146007 0.7 0.99431
Target:  5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3'
miRNA:   3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 145407 0.7 0.995844
Target:  5'- gGgGUAGGGGUuguAGcgGAAGGCAAUGa -3'
miRNA:   3'- gUgCGUUCCCG---UUuaCUUCUGUUACc -5'
28903 5' -47 NC_006146.1 + 144356 0.71 0.989885
Target:  5'- gACGUguGGGCGAGguuUGggGGCGGcUGGg -3'
miRNA:   3'- gUGCGuuCCCGUUU---ACuuCUGUU-ACC- -5'
28903 5' -47 NC_006146.1 + 143659 0.73 0.973435
Target:  5'- gGCGC-AGGGCA-----AGGCGAUGGg -3'
miRNA:   3'- gUGCGuUCCCGUuuacuUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 142929 0.7 0.99431
Target:  5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3'
miRNA:   3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 141278 0.71 0.989885
Target:  5'- gACGUguGGGCGAGguuUGggGGCGGcUGGg -3'
miRNA:   3'- gUGCGuuCCCGUUU---ACuuCUGUU-ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.