miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28903 5' -47 NC_006146.1 + 141201 0.66 0.999883
Target:  5'- aUAC-CAGGGGCuccuGGgggGAacuGGGCAGUGGa -3'
miRNA:   3'- -GUGcGUUCCCGu---UUa--CU---UCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 140077 0.71 0.991184
Target:  5'- ---aCAGGGGguGGUGGAGGgGGUGGa -3'
miRNA:   3'- gugcGUUCCCguUUACUUCUgUUACC- -5'
28903 5' -47 NC_006146.1 + 139966 0.75 0.938101
Target:  5'- uCugGCucauGGGCAGGUGuGGGCAgGUGGg -3'
miRNA:   3'- -GugCGuu--CCCGUUUACuUCUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 139127 0.73 0.976169
Target:  5'- gCugGCuccgauGGcGCAGGUGggGGCAGUGu -3'
miRNA:   3'- -GugCGuu----CC-CGUUUACuuCUGUUACc -5'
28903 5' -47 NC_006146.1 + 139114 0.68 0.998818
Target:  5'- uGCGUggGGuGuCAAuUGggGGCuGUGGg -3'
miRNA:   3'- gUGCGuuCC-C-GUUuACuuCUGuUACC- -5'
28903 5' -47 NC_006146.1 + 137840 0.67 0.999748
Target:  5'- aAgGCAGGGGgGcucGggGugGGUGGg -3'
miRNA:   3'- gUgCGUUCCCgUuuaCuuCugUUACC- -5'
28903 5' -47 NC_006146.1 + 135947 0.68 0.998746
Target:  5'- gCACGCAGGGGUgccacgucaccccgGGGUGcugggguGGGgGAUGGg -3'
miRNA:   3'- -GUGCGUUCCCG--------------UUUACu------UCUgUUACC- -5'
28903 5' -47 NC_006146.1 + 133820 0.72 0.98101
Target:  5'- uGCuCAGGGGaggGGGUGAGGAUggUGGg -3'
miRNA:   3'- gUGcGUUCCCg--UUUACUUCUGuuACC- -5'
28903 5' -47 NC_006146.1 + 129258 0.69 0.998261
Target:  5'- gGCGCGAGGGUcagGGAUGuGGGGC--UGGu -3'
miRNA:   3'- gUGCGUUCCCG---UUUAC-UUCUGuuACC- -5'
28903 5' -47 NC_006146.1 + 128084 0.73 0.967298
Target:  5'- uCAUGCAggugcgggaGGGGCcGAggcaGggGACAAUGGc -3'
miRNA:   3'- -GUGCGU---------UCCCGuUUa---CuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 126716 0.67 0.999748
Target:  5'- -uCGCAGGGcGCAGAggcugGAGGGCAc--- -3'
miRNA:   3'- guGCGUUCC-CGUUUa----CUUCUGUuacc -5'
28903 5' -47 NC_006146.1 + 126652 0.66 0.999911
Target:  5'- -cCGCAGGGGCAAu---GGACAc--- -3'
miRNA:   3'- guGCGUUCCCGUUuacuUCUGUuacc -5'
28903 5' -47 NC_006146.1 + 125995 0.75 0.938101
Target:  5'- gGCuGCGAGGcuuGgGAGUGggGGCGGUGGg -3'
miRNA:   3'- gUG-CGUUCC---CgUUUACuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 125787 0.7 0.995125
Target:  5'- aACGCAGGGGaAGAgGAAGGCAcgcGGa -3'
miRNA:   3'- gUGCGUUCCCgUUUaCUUCUGUua-CC- -5'
28903 5' -47 NC_006146.1 + 122709 0.67 0.999595
Target:  5'- --aGCAAGGGCAAAagccgcaaGAAGACAc--- -3'
miRNA:   3'- gugCGUUCCCGUUUa-------CUUCUGUuacc -5'
28903 5' -47 NC_006146.1 + 122615 0.66 0.999911
Target:  5'- gGCG-AGGGGCGGA-GGAGGCcg-GGg -3'
miRNA:   3'- gUGCgUUCCCGUUUaCUUCUGuuaCC- -5'
28903 5' -47 NC_006146.1 + 117820 0.7 0.996473
Target:  5'- gACGgAGGGGaGGA-GGAGGCGGUGGc -3'
miRNA:   3'- gUGCgUUCCCgUUUaCUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 116973 0.66 0.999911
Target:  5'- cCAUGUGAcGGCAGAUGAAcuuGAUcAUGGa -3'
miRNA:   3'- -GUGCGUUcCCGUUUACUU---CUGuUACC- -5'
28903 5' -47 NC_006146.1 + 116797 0.66 0.999932
Target:  5'- gACGCucAAGGGCGuggugGAGGGCGuccaGGa -3'
miRNA:   3'- gUGCG--UUCCCGUuua--CUUCUGUua--CC- -5'
28903 5' -47 NC_006146.1 + 116350 0.67 0.999595
Target:  5'- cCACGguGGGGCGGAgaucGGAGAucuCAA-GGa -3'
miRNA:   3'- -GUGCguUCCCGUUUa---CUUCU---GUUaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.