Results 61 - 80 of 146 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28903 | 5' | -47 | NC_006146.1 | + | 116349 | 0.66 | 0.999911 |
Target: 5'- gGCG-AAGGGaCGGAaGGAGGCGAgagGGg -3' miRNA: 3'- gUGCgUUCCC-GUUUaCUUCUGUUa--CC- -5' |
|||||||
28903 | 5' | -47 | NC_006146.1 | + | 116286 | 0.66 | 0.999932 |
Target: 5'- aCGCGCAccgcacGGGUGAAUGuGGGGCAGgucaGGa -3' miRNA: 3'- -GUGCGUu-----CCCGUUUAC-UUCUGUUa---CC- -5' |
|||||||
28903 | 5' | -47 | NC_006146.1 | + | 115547 | 0.66 | 0.999949 |
Target: 5'- gCGCGCGGuGGCGGGggcUGGAGGCGAc-- -3' miRNA: 3'- -GUGCGUUcCCGUUU---ACUUCUGUUacc -5' |
|||||||
28903 | 5' | -47 | NC_006146.1 | + | 111903 | 0.72 | 0.983135 |
Target: 5'- aGCGCGGGaGGCAGAUGuuGGCcagguugcaGGUGGc -3' miRNA: 3'- gUGCGUUC-CCGUUUACuuCUG---------UUACC- -5' |
|||||||
28903 | 5' | -47 | NC_006146.1 | + | 111344 | 0.66 | 0.999883 |
Target: 5'- gGCGCAAcccgagguGGGCAucagGgcGACAAacUGGg -3' miRNA: 3'- gUGCGUU--------CCCGUuua-CuuCUGUU--ACC- -5' |
|||||||
28903 | 5' | -47 | NC_006146.1 | + | 108612 | 0.72 | 0.98684 |
Target: 5'- cCAgGUAGGGGUccgcGGAGGCGGUGGu -3' miRNA: 3'- -GUgCGUUCCCGuuuaCUUCUGUUACC- -5' |
|||||||
28903 | 5' | -47 | NC_006146.1 | + | 106989 | 0.71 | 0.989747 |
Target: 5'- gGCaCAAGGGUgccucguGGAUGA-GACAAUGGa -3' miRNA: 3'- gUGcGUUCCCG-------UUUACUuCUGUUACC- -5' |
|||||||
28903 | 5' | -47 | NC_006146.1 | + | 103054 | 0.68 | 0.999492 |
Target: 5'- aGCGCcguguaggAGGGGUAGAUGggGuCAAacucagacuUGGa -3' miRNA: 3'- gUGCG--------UUCCCGUUUACuuCuGUU---------ACC- -5' |
|||||||
28903 | 5' | -47 | NC_006146.1 | + | 101936 | 0.7 | 0.995844 |
Target: 5'- -cCGCGGGGGCGgugaccGAUGA-GACAAcGGc -3' miRNA: 3'- guGCGUUCCCGU------UUACUuCUGUUaCC- -5' |
|||||||
28903 | 5' | -47 | NC_006146.1 | + | 101859 | 0.67 | 0.999595 |
Target: 5'- -cCGCAccacgGGuGGCGGGgcGAGGACGGUGGc -3' miRNA: 3'- guGCGU-----UC-CCGUUUa-CUUCUGUUACC- -5' |
|||||||
28903 | 5' | -47 | NC_006146.1 | + | 101536 | 0.66 | 0.999927 |
Target: 5'- uGCGCcAGGGCAcugacuacguccccAucuccGAGACGGUGGa -3' miRNA: 3'- gUGCGuUCCCGU--------------Uuac--UUCUGUUACC- -5' |
|||||||
28903 | 5' | -47 | NC_006146.1 | + | 100257 | 0.66 | 0.999948 |
Target: 5'- uCACGCAcgGGGGCuccAUGGAGccuccuaGCGggGGc -3' miRNA: 3'- -GUGCGU--UCCCGuu-UACUUC-------UGUuaCC- -5' |
|||||||
28903 | 5' | -47 | NC_006146.1 | + | 100251 | 0.77 | 0.881586 |
Target: 5'- gCugGCGGGGuGUGAgcggcucugGUGggGGCAAUGGg -3' miRNA: 3'- -GugCGUUCC-CGUU---------UACuuCUGUUACC- -5' |
|||||||
28903 | 5' | -47 | NC_006146.1 | + | 98296 | 0.68 | 0.998818 |
Target: 5'- gGCGguGGGGC---UGAGGGCGugcuccGUGGc -3' miRNA: 3'- gUGCguUCCCGuuuACUUCUGU------UACC- -5' |
|||||||
28903 | 5' | -47 | NC_006146.1 | + | 96670 | 0.66 | 0.99992 |
Target: 5'- cCGCGC-AGGGCc--UGAAGAagaaggucuccagcaCGGUGGu -3' miRNA: 3'- -GUGCGuUCCCGuuuACUUCU---------------GUUACC- -5' |
|||||||
28903 | 5' | -47 | NC_006146.1 | + | 94992 | 0.68 | 0.999034 |
Target: 5'- cCAgGCAuggGGGGCAGcUGAGGAgGugcUGGa -3' miRNA: 3'- -GUgCGU---UCCCGUUuACUUCUgUu--ACC- -5' |
|||||||
28903 | 5' | -47 | NC_006146.1 | + | 92644 | 0.75 | 0.921655 |
Target: 5'- aACGCAGGGaGCAGcucuuGUGGccauuggacgGGGCAGUGGg -3' miRNA: 3'- gUGCGUUCC-CGUU-----UACU----------UCUGUUACC- -5' |
|||||||
28903 | 5' | -47 | NC_006146.1 | + | 90197 | 0.72 | 0.9865 |
Target: 5'- -gUGCAgGGGGCAGAgggggaagaggaGGAGGCGGUGGa -3' miRNA: 3'- guGCGU-UCCCGUUUa-----------CUUCUGUUACC- -5' |
|||||||
28903 | 5' | -47 | NC_006146.1 | + | 90083 | 0.73 | 0.973435 |
Target: 5'- -gUGCAGGGGgGAgcaGUGGAGGCAGcGGa -3' miRNA: 3'- guGCGUUCCCgUU---UACUUCUGUUaCC- -5' |
|||||||
28903 | 5' | -47 | NC_006146.1 | + | 89817 | 0.69 | 0.998562 |
Target: 5'- gAgGCGGGGGCGug-GAGGugGA-GGa -3' miRNA: 3'- gUgCGUUCCCGUuuaCUUCugUUaCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home