miRNA display CGI


Results 81 - 100 of 146 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28903 5' -47 NC_006146.1 + 89163 0.68 0.999215
Target:  5'- aCGCGCAGGGGa--AUGGAGAgcucaCAGcGGa -3'
miRNA:   3'- -GUGCGUUCCCguuUACUUCU-----GUUaCC- -5'
28903 5' -47 NC_006146.1 + 88145 0.66 0.999911
Target:  5'- gGCGCAaaGGGGCuucacGAGGuguagauaACAAUGGc -3'
miRNA:   3'- gUGCGU--UCCCGuuua-CUUC--------UGUUACC- -5'
28903 5' -47 NC_006146.1 + 87178 0.67 0.999772
Target:  5'- cCugGCAuacuauuugccacccAGGGUGAGagGAGGACAGgUGGc -3'
miRNA:   3'- -GugCGU---------------UCCCGUUUa-CUUCUGUU-ACC- -5'
28903 5' -47 NC_006146.1 + 85612 0.68 0.999492
Target:  5'- gCugGCAccGGGGCAAagGGccagagaggcAGACAggGGc -3'
miRNA:   3'- -GugCGU--UCCCGUUuaCU----------UCUGUuaCC- -5'
28903 5' -47 NC_006146.1 + 85562 0.69 0.997908
Target:  5'- aCACGguCGGGGGCAcGUGggGugGcaGGa -3'
miRNA:   3'- -GUGC--GUUCCCGUuUACuuCugUuaCC- -5'
28903 5' -47 NC_006146.1 + 72008 0.68 0.998818
Target:  5'- cCugGCGcGGGUGAGUagcgggGGAGugGGUGGu -3'
miRNA:   3'- -GugCGUuCCCGUUUA------CUUCugUUACC- -5'
28903 5' -47 NC_006146.1 + 71789 0.66 0.999949
Target:  5'- gGCGUuAGGGCuuGUGGcuccCGAUGGg -3'
miRNA:   3'- gUGCGuUCCCGuuUACUucu-GUUACC- -5'
28903 5' -47 NC_006146.1 + 71653 0.66 0.999883
Target:  5'- gGCgGCGAGGGaaggaaGAAgcccGAGACGGUGGu -3'
miRNA:   3'- gUG-CGUUCCCg-----UUUac--UUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 71410 0.67 0.999595
Target:  5'- -uUGCAuuuuGGGCAGGU-AGGAUGGUGGu -3'
miRNA:   3'- guGCGUu---CCCGUUUAcUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 69513 0.81 0.682859
Target:  5'- aAC-CAGGGGCAGaAUGAGGAUGAUGGa -3'
miRNA:   3'- gUGcGUUCCCGUU-UACUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 69417 0.68 0.999034
Target:  5'- gACGagcAGGGCcaccgagcacaGGAUGggGAUGAUGGc -3'
miRNA:   3'- gUGCgu-UCCCG-----------UUUACuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 68604 0.7 0.995125
Target:  5'- -gUGCAGguGGGCGAucugcugagaaAUGAgcAGACGAUGGg -3'
miRNA:   3'- guGCGUU--CCCGUU-----------UACU--UCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 64344 0.66 0.999911
Target:  5'- --aGCAuuGGGCAAuauaaauuacUGGAGugGAUGGu -3'
miRNA:   3'- gugCGUu-CCCGUUu---------ACUUCugUUACC- -5'
28903 5' -47 NC_006146.1 + 61815 0.78 0.823696
Target:  5'- --aGCAacauuaGGGGCGcuGGUGggGGCAGUGGg -3'
miRNA:   3'- gugCGU------UCCCGU--UUACuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 61667 0.73 0.967298
Target:  5'- aACGCAGGaGGUGGAgagagGggGGCAcgGGu -3'
miRNA:   3'- gUGCGUUC-CCGUUUa----CuuCUGUuaCC- -5'
28903 5' -47 NC_006146.1 + 59582 0.71 0.993387
Target:  5'- gGCGCAGGuGGCGAucugGAGGGCGGc-- -3'
miRNA:   3'- gUGCGUUC-CCGUUua--CUUCUGUUacc -5'
28903 5' -47 NC_006146.1 + 59444 0.84 0.564041
Target:  5'- gGCGCAgggcagGGGGCAggacuccccgauGAUGGAGGCAAUGGc -3'
miRNA:   3'- gUGCGU------UCCCGU------------UUACUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 58951 0.65 0.999959
Target:  5'- uGCGCuGAGGuGCugcagcccucgagGGAGACGGUGGc -3'
miRNA:   3'- gUGCG-UUCC-CGuuua---------CUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 58102 0.72 0.983135
Target:  5'- gUACGUggGGcGCAAcgGGAGGCAGg-- -3'
miRNA:   3'- -GUGCGuuCC-CGUUuaCUUCUGUUacc -5'
28903 5' -47 NC_006146.1 + 57292 0.67 0.999595
Target:  5'- aGCGCcGGGGCAGGcgacGGAGAgAcUGGc -3'
miRNA:   3'- gUGCGuUCCCGUUUa---CUUCUgUuACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.