miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28903 5' -47 NC_006146.1 + 122709 0.67 0.999595
Target:  5'- --aGCAAGGGCAAAagccgcaaGAAGACAc--- -3'
miRNA:   3'- gugCGUUCCCGUUUa-------CUUCUGUuacc -5'
28903 5' -47 NC_006146.1 + 148042 0.7 0.995844
Target:  5'- gGCGUuGGGGCccaugauGAUGAGGAgGAUGa -3'
miRNA:   3'- gUGCGuUCCCGu------UUACUUCUgUUACc -5'
28903 5' -47 NC_006146.1 + 125995 0.75 0.938101
Target:  5'- gGCuGCGAGGcuuGgGAGUGggGGCGGUGGg -3'
miRNA:   3'- gUG-CGUUCC---CgUUUACuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 71410 0.67 0.999595
Target:  5'- -uUGCAuuuuGGGCAGGU-AGGAUGGUGGu -3'
miRNA:   3'- guGCGUu---CCCGUUUAcUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 46799 0.75 0.926842
Target:  5'- gGCGCGAGGGCAAAggccucUGGguucuccAGcACGGUGGg -3'
miRNA:   3'- gUGCGUUCCCGUUU------ACU-------UC-UGUUACC- -5'
28903 5' -47 NC_006146.1 + 156513 0.66 0.999932
Target:  5'- gUACGCGgcccggAGGGgAGcgGGAGGCGAgaucccgGGa -3'
miRNA:   3'- -GUGCGU------UCCCgUUuaCUUCUGUUa------CC- -5'
28903 5' -47 NC_006146.1 + 54029 0.74 0.952149
Target:  5'- gGCGCcuccgGAGGGCGGccAUGucGGCGGUGGu -3'
miRNA:   3'- gUGCG-----UUCCCGUU--UACuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 22090 0.66 0.999932
Target:  5'- gGCGCcuGGGCGAggcuggGUGGcuGGGCAGgccgGGu -3'
miRNA:   3'- gUGCGuuCCCGUU------UACU--UCUGUUa---CC- -5'
28903 5' -47 NC_006146.1 + 150462 0.66 0.999932
Target:  5'- --gGaCAGGGGCug--GAuGACAGUGGc -3'
miRNA:   3'- gugC-GUUCCCGuuuaCUuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 116973 0.66 0.999911
Target:  5'- cCAUGUGAcGGCAGAUGAAcuuGAUcAUGGa -3'
miRNA:   3'- -GUGCGUUcCCGUUUACUU---CUGuUACC- -5'
28903 5' -47 NC_006146.1 + 168429 0.66 0.999911
Target:  5'- cCugGCGGGGG-AGA-GggGGCAGggcUGGc -3'
miRNA:   3'- -GugCGUUCCCgUUUaCuuCUGUU---ACC- -5'
28903 5' -47 NC_006146.1 + 54364 0.67 0.999848
Target:  5'- --aGCAGGGaaaaGAGUGAggugggccAGACGAUGGg -3'
miRNA:   3'- gugCGUUCCcg--UUUACU--------UCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 137840 0.67 0.999748
Target:  5'- aAgGCAGGGGgGcucGggGugGGUGGg -3'
miRNA:   3'- gUgCGUUCCCgUuuaCuuCugUUACC- -5'
28903 5' -47 NC_006146.1 + 103054 0.68 0.999492
Target:  5'- aGCGCcguguaggAGGGGUAGAUGggGuCAAacucagacuUGGa -3'
miRNA:   3'- gUGCG--------UUCCCGUUUACuuCuGUU---------ACC- -5'
28903 5' -47 NC_006146.1 + 139114 0.68 0.998818
Target:  5'- uGCGUggGGuGuCAAuUGggGGCuGUGGg -3'
miRNA:   3'- gUGCGuuCC-C-GUUuACuuCUGuUACC- -5'
28903 5' -47 NC_006146.1 + 85562 0.69 0.997908
Target:  5'- aCACGguCGGGGGCAcGUGggGugGcaGGa -3'
miRNA:   3'- -GUGC--GUUCCCGUuUACuuCugUuaCC- -5'
28903 5' -47 NC_006146.1 + 53747 0.7 0.996473
Target:  5'- uGCGCcGGGGCGAAgacGGGCGGcGGg -3'
miRNA:   3'- gUGCGuUCCCGUUUacuUCUGUUaCC- -5'
28903 5' -47 NC_006146.1 + 68604 0.7 0.995125
Target:  5'- -gUGCAGguGGGCGAucugcugagaaAUGAgcAGACGAUGGg -3'
miRNA:   3'- guGCGUU--CCCGUU-----------UACU--UCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 156287 0.71 0.992349
Target:  5'- cCACGCAgcgccagcAGGGCAcagaGGUGAuguagAGGCGcgGGu -3'
miRNA:   3'- -GUGCGU--------UCCCGU----UUACU-----UCUGUuaCC- -5'
28903 5' -47 NC_006146.1 + 133820 0.72 0.98101
Target:  5'- uGCuCAGGGGaggGGGUGAGGAUggUGGg -3'
miRNA:   3'- gUGcGUUCCCg--UUUACUUCUGuuACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.