Results 61 - 80 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28903 | 5' | -47 | NC_006146.1 | + | 155895 | 0.71 | 0.993387 |
Target: 5'- cCugGCAaacAGGGCAGA--GAGACGggaAUGGc -3' miRNA: 3'- -GugCGU---UCCCGUUUacUUCUGU---UACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 2934 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 2902 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 116349 | 0.66 | 0.999911 |
Target: 5'- gGCG-AAGGGaCGGAaGGAGGCGAgagGGg -3' miRNA: 3'- gUGCgUUCCC-GUUUaCUUCUGUUa--CC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 2001 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 144356 | 0.71 | 0.989885 |
Target: 5'- gACGUguGGGCGAGguuUGggGGCGGcUGGg -3' miRNA: 3'- gUGCGuuCCCGUUU---ACuuCUGUU-ACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 1938 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 2870 | 0.68 | 0.998818 |
Target: 5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3' miRNA: 3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 111344 | 0.66 | 0.999883 |
Target: 5'- gGCGCAAcccgagguGGGCAucagGgcGACAAacUGGg -3' miRNA: 3'- gUGCGUU--------CCCGUuua-CuuCUGUU--ACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 142929 | 0.7 | 0.99431 |
Target: 5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3' miRNA: 3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 59582 | 0.71 | 0.993387 |
Target: 5'- gGCGCAGGuGGCGAucugGAGGGCGGc-- -3' miRNA: 3'- gUGCGUUC-CCGUUua--CUUCUGUUacc -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 140077 | 0.71 | 0.991184 |
Target: 5'- ---aCAGGGGguGGUGGAGGgGGUGGa -3' miRNA: 3'- gugcGUUCCCguUUACUUCUgUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 153590 | 0.71 | 0.989885 |
Target: 5'- gACGUguGGGCGAGguuUGggGGCGGcUGGg -3' miRNA: 3'- gUGCGuuCCCGUUU---ACuuCUGUU-ACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 150512 | 0.71 | 0.989885 |
Target: 5'- gACGUguGGGCGAGguuUGggGGCGGcUGGg -3' miRNA: 3'- gUGCGuuCCCGUUU---ACuuCUGUU-ACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 147434 | 0.71 | 0.989885 |
Target: 5'- gACGUguGGGCGAGguuUGggGGCGGcUGGg -3' miRNA: 3'- gUGCGuuCCCGUUU---ACuuCUGUU-ACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 141278 | 0.71 | 0.989885 |
Target: 5'- gACGUguGGGCGAGguuUGggGGCGGcUGGg -3' miRNA: 3'- gUGCGuuCCCGUUU---ACuuCUGUU-ACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 106989 | 0.71 | 0.989747 |
Target: 5'- gGCaCAAGGGUgccucguGGAUGA-GACAAUGGa -3' miRNA: 3'- gUGcGUUCCCG-------UUUACUuCUGUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 5831 | 0.72 | 0.98684 |
Target: 5'- gAgGCAAuGG-AGAUGGAGGCAAUGGa -3' miRNA: 3'- gUgCGUUcCCgUUUACUUCUGUUACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 24181 | 0.72 | 0.98684 |
Target: 5'- gCACGUGgacAGGGCAGAgGAGGGC--UGGg -3' miRNA: 3'- -GUGCGU---UCCCGUUUaCUUCUGuuACC- -5' |
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28903 | 5' | -47 | NC_006146.1 | + | 71653 | 0.66 | 0.999883 |
Target: 5'- gGCgGCGAGGGaaggaaGAAgcccGAGACGGUGGu -3' miRNA: 3'- gUG-CGUUCCCg-----UUUac--UUCUGUUACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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