miRNA display CGI


Results 81 - 100 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28903 5' -47 NC_006146.1 + 20318 0.66 0.999932
Target:  5'- -cUGCA--GGCGGGUGcuGGACGAUGGc -3'
miRNA:   3'- guGCGUucCCGUUUACu-UCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 117820 0.7 0.996473
Target:  5'- gACGgAGGGGaGGA-GGAGGCGGUGGc -3'
miRNA:   3'- gUGCgUUCCCgUUUaCUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 101936 0.7 0.995844
Target:  5'- -cCGCGGGGGCGgugaccGAUGA-GACAAcGGc -3'
miRNA:   3'- guGCGUUCCCGU------UUACUuCUGUUaCC- -5'
28903 5' -47 NC_006146.1 + 5831 0.72 0.98684
Target:  5'- gAgGCAAuGG-AGAUGGAGGCAAUGGa -3'
miRNA:   3'- gUgCGUUcCCgUUUACUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 108612 0.72 0.98684
Target:  5'- cCAgGUAGGGGUccgcGGAGGCGGUGGu -3'
miRNA:   3'- -GUgCGUUCCCGuuuaCUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 106989 0.71 0.989747
Target:  5'- gGCaCAAGGGUgccucguGGAUGA-GACAAUGGa -3'
miRNA:   3'- gUGcGUUCCCG-------UUUACUuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 141278 0.71 0.989885
Target:  5'- gACGUguGGGCGAGguuUGggGGCGGcUGGg -3'
miRNA:   3'- gUGCGuuCCCGUUU---ACuuCUGUU-ACC- -5'
28903 5' -47 NC_006146.1 + 144356 0.71 0.989885
Target:  5'- gACGUguGGGCGAGguuUGggGGCGGcUGGg -3'
miRNA:   3'- gUGCGuuCCCGUUU---ACuuCUGUU-ACC- -5'
28903 5' -47 NC_006146.1 + 147434 0.71 0.989885
Target:  5'- gACGUguGGGCGAGguuUGggGGCGGcUGGg -3'
miRNA:   3'- gUGCGuuCCCGUUU---ACuuCUGUU-ACC- -5'
28903 5' -47 NC_006146.1 + 150512 0.71 0.989885
Target:  5'- gACGUguGGGCGAGguuUGggGGCGGcUGGg -3'
miRNA:   3'- gUGCGuuCCCGUUU---ACuuCUGUU-ACC- -5'
28903 5' -47 NC_006146.1 + 153590 0.71 0.989885
Target:  5'- gACGUguGGGCGAGguuUGggGGCGGcUGGg -3'
miRNA:   3'- gUGCGuuCCCGUUU---ACuuCUGUU-ACC- -5'
28903 5' -47 NC_006146.1 + 140077 0.71 0.991184
Target:  5'- ---aCAGGGGguGGUGGAGGgGGUGGa -3'
miRNA:   3'- gugcGUUCCCguUUACUUCUgUUACC- -5'
28903 5' -47 NC_006146.1 + 59582 0.71 0.993387
Target:  5'- gGCGCAGGuGGCGAucugGAGGGCGGc-- -3'
miRNA:   3'- gUGCGUUC-CCGUUua--CUUCUGUUacc -5'
28903 5' -47 NC_006146.1 + 142929 0.7 0.99431
Target:  5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3'
miRNA:   3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 146007 0.7 0.99431
Target:  5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3'
miRNA:   3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 149085 0.7 0.99431
Target:  5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3'
miRNA:   3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 152163 0.7 0.99431
Target:  5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3'
miRNA:   3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 155241 0.7 0.99431
Target:  5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3'
miRNA:   3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 158320 0.7 0.99431
Target:  5'- cCGgGUucuGGGCuuGUGggGACAcAUGGg -3'
miRNA:   3'- -GUgCGuu-CCCGuuUACuuCUGU-UACC- -5'
28903 5' -47 NC_006146.1 + 3777 0.7 0.995125
Target:  5'- cUACGCGGGGGgGGggGggGGgGggGGg -3'
miRNA:   3'- -GUGCGUUCCCgUUuaCuuCUgUuaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.