miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28903 5' -47 NC_006146.1 + 20318 0.66 0.999932
Target:  5'- -cUGCA--GGCGGGUGcuGGACGAUGGc -3'
miRNA:   3'- guGCGUucCCGUUUACu-UCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 116797 0.66 0.999932
Target:  5'- gACGCucAAGGGCGuggugGAGGGCGuccaGGa -3'
miRNA:   3'- gUGCG--UUCCCGUuua--CUUCUGUua--CC- -5'
28903 5' -47 NC_006146.1 + 40410 0.66 0.999946
Target:  5'- -cCGCGGGGGCAAAguagccacccggGgcGGCAGcGGc -3'
miRNA:   3'- guGCGUUCCCGUUUa-----------CuuCUGUUaCC- -5'
28903 5' -47 NC_006146.1 + 165382 0.66 0.999949
Target:  5'- gGCGcCAGGGGUcAGUGcgauGACuAUGGa -3'
miRNA:   3'- gUGC-GUUCCCGuUUACuu--CUGuUACC- -5'
28903 5' -47 NC_006146.1 + 19758 0.66 0.999949
Target:  5'- gACGCu-GGGCAccugcGAAGACAuagagGGg -3'
miRNA:   3'- gUGCGuuCCCGUuua--CUUCUGUua---CC- -5'
28903 5' -47 NC_006146.1 + 71653 0.66 0.999883
Target:  5'- gGCgGCGAGGGaaggaaGAAgcccGAGACGGUGGu -3'
miRNA:   3'- gUG-CGUUCCCg-----UUUac--UUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 42 0.66 0.999883
Target:  5'- uUACGCAAGGGUGAuuucGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 2870 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuucGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 2902 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 2934 0.68 0.998818
Target:  5'- uCACGCAAGGGUGAuuuaGGAGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CUUCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 72008 0.68 0.998818
Target:  5'- cCugGCGcGGGUGAGUagcgggGGAGugGGUGGu -3'
miRNA:   3'- -GugCGUuCCCGUUUA------CUUCugUUACC- -5'
28903 5' -47 NC_006146.1 + 69417 0.68 0.999034
Target:  5'- gACGagcAGGGCcaccgagcacaGGAUGggGAUGAUGGc -3'
miRNA:   3'- gUGCgu-UCCCG-----------UUUACuuCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 94992 0.68 0.999034
Target:  5'- cCAgGCAuggGGGGCAGcUGAGGAgGugcUGGa -3'
miRNA:   3'- -GUgCGU---UCCCGUUuACUUCUgUu--ACC- -5'
28903 5' -47 NC_006146.1 + 74 0.68 0.999492
Target:  5'- uCACGCAAGGGUGAuuucGggGAg---GGg -3'
miRNA:   3'- -GUGCGUUCCCGUUua--CuuCUguuaCC- -5'
28903 5' -47 NC_006146.1 + 13311 0.68 0.999492
Target:  5'- cCACGUgcuGGGCAcc--AGGGCGGUGGa -3'
miRNA:   3'- -GUGCGuu-CCCGUuuacUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 101859 0.67 0.999595
Target:  5'- -cCGCAccacgGGuGGCGGGgcGAGGACGGUGGc -3'
miRNA:   3'- guGCGU-----UC-CCGUUUa-CUUCUGUUACC- -5'
28903 5' -47 NC_006146.1 + 159830 0.67 0.999595
Target:  5'- uCGCgGguGGGGCAAccuGUGGgcgGGugGGUGGu -3'
miRNA:   3'- -GUG-CguUCCCGUU---UACU---UCugUUACC- -5'
28903 5' -47 NC_006146.1 + 57292 0.67 0.999595
Target:  5'- aGCGCcGGGGCAGGcgacGGAGAgAcUGGc -3'
miRNA:   3'- gUGCGuUCCCGUUUa---CUUCUgUuACC- -5'
28903 5' -47 NC_006146.1 + 87178 0.67 0.999772
Target:  5'- cCugGCAuacuauuugccacccAGGGUGAGagGAGGACAGgUGGc -3'
miRNA:   3'- -GugCGU---------------UCCCGUUUa-CUUCUGUU-ACC- -5'
28903 5' -47 NC_006146.1 + 141201 0.66 0.999883
Target:  5'- aUAC-CAGGGGCuccuGGgggGAacuGGGCAGUGGa -3'
miRNA:   3'- -GUGcGUUCCCGu---UUa--CU---UCUGUUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.