miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28905 3' -59.5 NC_006146.1 + 161240 0.66 0.799362
Target:  5'- -aUGUGGGGGGCaguauaagGGCCcgucccaacgcGGCAUCCacGCg -3'
miRNA:   3'- cgACGUCCCCCG--------CCGG-----------UUGUAGGa-CG- -5'
28905 3' -59.5 NC_006146.1 + 123718 0.66 0.799362
Target:  5'- cGCU-CGGGGcGGCGGCgGGCucUCCccaguaUGCc -3'
miRNA:   3'- -CGAcGUCCC-CCGCCGgUUGu-AGG------ACG- -5'
28905 3' -59.5 NC_006146.1 + 71865 0.66 0.790547
Target:  5'- cGCcggGCccuGGGGGGCcucuacacGGCCGucacGCGgacccUCCUGCg -3'
miRNA:   3'- -CGa--CG---UCCCCCG--------CCGGU----UGU-----AGGACG- -5'
28905 3' -59.5 NC_006146.1 + 100712 0.66 0.790547
Target:  5'- cGCUGC-GGGGGUGGgugugggaCCGGCcucgCCgGCc -3'
miRNA:   3'- -CGACGuCCCCCGCC--------GGUUGua--GGaCG- -5'
28905 3' -59.5 NC_006146.1 + 102060 0.66 0.790547
Target:  5'- uGUUGUGuGGGGGCaagcaccaguGGCCAACAuacUCCggGUu -3'
miRNA:   3'- -CGACGU-CCCCCG----------CCGGUUGU---AGGa-CG- -5'
28905 3' -59.5 NC_006146.1 + 55028 0.66 0.790547
Target:  5'- gGCggGCGggauGGGGGUcggGGCCGGgG-CCUGCc -3'
miRNA:   3'- -CGa-CGU----CCCCCG---CCGGUUgUaGGACG- -5'
28905 3' -59.5 NC_006146.1 + 152890 0.66 0.781597
Target:  5'- uCUGCAGGGuGGCGauGCC---GUCCaGCu -3'
miRNA:   3'- cGACGUCCC-CCGC--CGGuugUAGGaCG- -5'
28905 3' -59.5 NC_006146.1 + 16090 0.66 0.781597
Target:  5'- --gGCAGGGGGUGGgUAuuuaaggaucuAUAUgcCCUGCu -3'
miRNA:   3'- cgaCGUCCCCCGCCgGU-----------UGUA--GGACG- -5'
28905 3' -59.5 NC_006146.1 + 127571 0.66 0.781597
Target:  5'- cCUGCuGGcccuGGGCGGCCGAgG-CC-GCg -3'
miRNA:   3'- cGACGuCC----CCCGCCGGUUgUaGGaCG- -5'
28905 3' -59.5 NC_006146.1 + 85306 0.66 0.781597
Target:  5'- cGgUGCcagcuuccgAGGcGGGCGGCU-GCcUCCUGCc -3'
miRNA:   3'- -CgACG---------UCC-CCCGCCGGuUGuAGGACG- -5'
28905 3' -59.5 NC_006146.1 + 46079 0.66 0.781597
Target:  5'- uGCUGCAGGGccucGGgGGCgaAGCA-CCgucGCg -3'
miRNA:   3'- -CGACGUCCC----CCgCCGg-UUGUaGGa--CG- -5'
28905 3' -59.5 NC_006146.1 + 128103 0.66 0.780694
Target:  5'- uCUGCGagaccgccaaccuGGccgaGGCGGCCAcgcGCcgCCUGCa -3'
miRNA:   3'- cGACGU-------------CCc---CCGCCGGU---UGuaGGACG- -5'
28905 3' -59.5 NC_006146.1 + 122854 0.66 0.780694
Target:  5'- cGCUGCccGGGGCGcuggacgacccgaGCCGGCccgCCgUGCc -3'
miRNA:   3'- -CGACGucCCCCGC-------------CGGUUGua-GG-ACG- -5'
28905 3' -59.5 NC_006146.1 + 71419 0.66 0.772519
Target:  5'- cGCUacGUGGGaagGGcGCGGCCGGCAUUUUGg -3'
miRNA:   3'- -CGA--CGUCC---CC-CGCCGGUUGUAGGACg -5'
28905 3' -59.5 NC_006146.1 + 149103 0.66 0.772519
Target:  5'- ---aCGGGGGcGCGcGcCCGGCAUCCcGCu -3'
miRNA:   3'- cgacGUCCCC-CGC-C-GGUUGUAGGaCG- -5'
28905 3' -59.5 NC_006146.1 + 141446 0.66 0.771604
Target:  5'- --gGguGGGGaGUGGCCAgggaggacggaggGCcuggCCUGCg -3'
miRNA:   3'- cgaCguCCCC-CGCCGGU-------------UGua--GGACG- -5'
28905 3' -59.5 NC_006146.1 + 144524 0.66 0.771604
Target:  5'- --gGguGGGGaGUGGCCAgggaggacggaggGCcuggCCUGCg -3'
miRNA:   3'- cgaCguCCCC-CGCCGGU-------------UGua--GGACG- -5'
28905 3' -59.5 NC_006146.1 + 147602 0.66 0.771604
Target:  5'- --gGguGGGGaGUGGCCAgggaggacggaggGCcuggCCUGCg -3'
miRNA:   3'- cgaCguCCCC-CGCCGGU-------------UGua--GGACG- -5'
28905 3' -59.5 NC_006146.1 + 153757 0.66 0.771604
Target:  5'- --gGguGGGGaGUGGCCAgggaggacggaggGCcuggCCUGCg -3'
miRNA:   3'- cgaCguCCCC-CGCCGGU-------------UGua--GGACG- -5'
28905 3' -59.5 NC_006146.1 + 156835 0.66 0.771604
Target:  5'- --gGguGGGGaGUGGCCAgggaggacggaggGCcuggCCUGCg -3'
miRNA:   3'- cgaCguCCCC-CGCCGGU-------------UGua--GGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.