miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28905 3' -59.5 NC_006146.1 + 21693 1.13 0.000743
Target:  5'- uGCUGCAGGGGGCGGCCAACAUCCUGCa -3'
miRNA:   3'- -CGACGUCCCCCGCCGGUUGUAGGACG- -5'
28905 3' -59.5 NC_006146.1 + 136707 0.79 0.167476
Target:  5'- cGCUccgGCGGGGGGUGGCCGGCcg-CUGCc -3'
miRNA:   3'- -CGA---CGUCCCCCGCCGGUUGuagGACG- -5'
28905 3' -59.5 NC_006146.1 + 92078 0.78 0.184786
Target:  5'- uGCUGCuGGGGGGCGGCCcgg--CCUGg -3'
miRNA:   3'- -CGACG-UCCCCCGCCGGuuguaGGACg -5'
28905 3' -59.5 NC_006146.1 + 169178 0.77 0.235082
Target:  5'- cCUGCAGGGGG-GGCCGgcgggGCGUCCcGUc -3'
miRNA:   3'- cGACGUCCCCCgCCGGU-----UGUAGGaCG- -5'
28905 3' -59.5 NC_006146.1 + 168246 0.77 0.235082
Target:  5'- cCUGCAGGGGG-GGCCGgcgggGCGUCCcGUc -3'
miRNA:   3'- cGACGUCCCCCgCCGGU-----UGUAGGaCG- -5'
28905 3' -59.5 NC_006146.1 + 167314 0.77 0.235082
Target:  5'- cCUGCAGGGGG-GGCCGgcgggGCGUCCcGUc -3'
miRNA:   3'- cGACGUCCCCCgCCGGU-----UGUAGGaCG- -5'
28905 3' -59.5 NC_006146.1 + 71254 0.76 0.240699
Target:  5'- gGCcugGCGGGGGGCGGCCucuACGccuUCCUccggaGCa -3'
miRNA:   3'- -CGa--CGUCCCCCGCCGGu--UGU---AGGA-----CG- -5'
28905 3' -59.5 NC_006146.1 + 20317 0.76 0.24585
Target:  5'- cCUGCAGGcGGGUgcuggacgauGGCCAGCAgauccgcguguucUCCUGCc -3'
miRNA:   3'- cGACGUCC-CCCG----------CCGGUUGU-------------AGGACG- -5'
28905 3' -59.5 NC_006146.1 + 125995 0.76 0.264293
Target:  5'- gGCUGCGaggcuugggaguGGGGGCGGUgGGC-UUCUGCu -3'
miRNA:   3'- -CGACGU------------CCCCCGCCGgUUGuAGGACG- -5'
28905 3' -59.5 NC_006146.1 + 68099 0.75 0.30315
Target:  5'- cGCgaucCAGGuGGGCGGCCAGCcgGUCC-GCg -3'
miRNA:   3'- -CGac--GUCC-CCCGCCGGUUG--UAGGaCG- -5'
28905 3' -59.5 NC_006146.1 + 92227 0.75 0.30315
Target:  5'- uGCUGCuGGGGGGCGGgCCcgg--CCUGUg -3'
miRNA:   3'- -CGACG-UCCCCCGCC-GGuuguaGGACG- -5'
28905 3' -59.5 NC_006146.1 + 30139 0.74 0.316339
Target:  5'- -aUGCAGGGGGgugggcaUGGCCAcGCAUCCgagaGCg -3'
miRNA:   3'- cgACGUCCCCC-------GCCGGU-UGUAGGa---CG- -5'
28905 3' -59.5 NC_006146.1 + 170108 0.74 0.331414
Target:  5'- cGCcGCAGGGGG-GGCCGgcgggGCGUCCcGUc -3'
miRNA:   3'- -CGaCGUCCCCCgCCGGU-----UGUAGGaCG- -5'
28905 3' -59.5 NC_006146.1 + 135406 0.74 0.353854
Target:  5'- cGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3'
miRNA:   3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5'
28905 3' -59.5 NC_006146.1 + 135685 0.74 0.353854
Target:  5'- cGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3'
miRNA:   3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5'
28905 3' -59.5 NC_006146.1 + 135499 0.74 0.353854
Target:  5'- cGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3'
miRNA:   3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5'
28905 3' -59.5 NC_006146.1 + 135592 0.74 0.353854
Target:  5'- cGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3'
miRNA:   3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5'
28905 3' -59.5 NC_006146.1 + 135220 0.74 0.353854
Target:  5'- cGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3'
miRNA:   3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5'
28905 3' -59.5 NC_006146.1 + 135313 0.74 0.353854
Target:  5'- cGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3'
miRNA:   3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5'
28905 3' -59.5 NC_006146.1 + 135777 0.74 0.353854
Target:  5'- cGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3'
miRNA:   3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.