miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28905 3' -59.5 NC_006146.1 + 103244 0.66 0.763322
Target:  5'- --gGCGGuuGGCGGCCG-CGUCCccGCa -3'
miRNA:   3'- cgaCGUCccCCGCCGGUuGUAGGa-CG- -5'
28905 3' -59.5 NC_006146.1 + 61829 0.66 0.763322
Target:  5'- cGCUGguGGGGGCaguggGGCUggugccggGAC-UCCcgggGCa -3'
miRNA:   3'- -CGACguCCCCCG-----CCGG--------UUGuAGGa---CG- -5'
28905 3' -59.5 NC_006146.1 + 92138 0.66 0.763322
Target:  5'- nCUGCuGGGGGGCGgGCC--CggCCUGg -3'
miRNA:   3'- cGACG-UCCCCCGC-CGGuuGuaGGACg -5'
28905 3' -59.5 NC_006146.1 + 123019 0.66 0.763322
Target:  5'- aGCUGCugaccgAGGccgaGGCGGCCcAgGUCCggGCg -3'
miRNA:   3'- -CGACG------UCCc---CCGCCGGuUgUAGGa-CG- -5'
28905 3' -59.5 NC_006146.1 + 92347 0.66 0.763322
Target:  5'- aGCUGauauGGGGCGGCUcGCAUUg-GCa -3'
miRNA:   3'- -CGACguc-CCCCGCCGGuUGUAGgaCG- -5'
28905 3' -59.5 NC_006146.1 + 92288 0.66 0.763322
Target:  5'- nCUGCuGGGGGGCGgGCC--CggCCUGg -3'
miRNA:   3'- cGACG-UCCCCCGC-CGGuuGuaGGACg -5'
28905 3' -59.5 NC_006146.1 + 92198 0.66 0.763322
Target:  5'- nCUGCuGGGGGGCGgGCC--CggCCUGg -3'
miRNA:   3'- cGACG-UCCCCCGC-CGGuuGuaGGACg -5'
28905 3' -59.5 NC_006146.1 + 67657 0.66 0.763322
Target:  5'- uCUGCGGGGacgcGGCcGCCAACcgCCaGUu -3'
miRNA:   3'- cGACGUCCC----CCGcCGGUUGuaGGaCG- -5'
28905 3' -59.5 NC_006146.1 + 92049 0.66 0.763322
Target:  5'- nCUGCuGGGGGGCGgGCC--CggCCUGg -3'
miRNA:   3'- cGACG-UCCCCCGC-CGGuuGuaGGACg -5'
28905 3' -59.5 NC_006146.1 + 47532 0.66 0.762396
Target:  5'- gGUUGCGGGGccccCGGCCAGCGccagagcUCCcucgGCg -3'
miRNA:   3'- -CGACGUCCCcc--GCCGGUUGU-------AGGa---CG- -5'
28905 3' -59.5 NC_006146.1 + 21282 0.66 0.762396
Target:  5'- uGCUgGCGGacgcccggguaaaGGaGGCGGCCAGCcUCCUc- -3'
miRNA:   3'- -CGA-CGUC-------------CC-CCGCCGGUUGuAGGAcg -5'
28905 3' -59.5 NC_006146.1 + 169246 0.66 0.754014
Target:  5'- gGCUG-AGGGGGCucccgagggcggGGCCGGgG-CCUGg -3'
miRNA:   3'- -CGACgUCCCCCG------------CCGGUUgUaGGACg -5'
28905 3' -59.5 NC_006146.1 + 15418 0.66 0.754014
Target:  5'- gGCcuCAGaGGGGCuGGCCcggcuGCAgUCCUGCc -3'
miRNA:   3'- -CGacGUC-CCCCG-CCGGu----UGU-AGGACG- -5'
28905 3' -59.5 NC_006146.1 + 3382 0.66 0.754014
Target:  5'- --gGcCGGGGGcGCGGCCcGGCGccagcCCUGCc -3'
miRNA:   3'- cgaC-GUCCCC-CGCCGG-UUGUa----GGACG- -5'
28905 3' -59.5 NC_006146.1 + 170177 0.66 0.754014
Target:  5'- gGCUG-AGGGGGCucccgagggcggGGCCGGgG-CCUGg -3'
miRNA:   3'- -CGACgUCCCCCG------------CCGGUUgUaGGACg -5'
28905 3' -59.5 NC_006146.1 + 168314 0.66 0.754014
Target:  5'- gGCUG-AGGGGGCucccgagggcggGGCCGGgG-CCUGg -3'
miRNA:   3'- -CGACgUCCCCCG------------CCGGUUgUaGGACg -5'
28905 3' -59.5 NC_006146.1 + 167382 0.66 0.754014
Target:  5'- gGCUG-AGGGGGCucccgagggcggGGCCGGgG-CCUGg -3'
miRNA:   3'- -CGACgUCCCCCG------------CCGGUUgUaGGACg -5'
28905 3' -59.5 NC_006146.1 + 2450 0.66 0.754014
Target:  5'- --gGcCGGGGGcGCGGCCcGGCGccagcCCUGCc -3'
miRNA:   3'- cgaC-GUCCCC-CGCCGG-UUGUa----GGACG- -5'
28905 3' -59.5 NC_006146.1 + 1518 0.66 0.754014
Target:  5'- --gGcCGGGGGcGCGGCCcGGCGccagcCCUGCc -3'
miRNA:   3'- cgaC-GUCCCC-CGCCGG-UUGUa----GGACG- -5'
28905 3' -59.5 NC_006146.1 + 587 0.66 0.754014
Target:  5'- --gGcCGGGGGcGCGGCCcGGCGccagcCCUGCc -3'
miRNA:   3'- cgaC-GUCCCC-CGCCGG-UUGUa----GGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.