miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28905 3' -59.5 NC_006146.1 + 15418 0.66 0.754014
Target:  5'- gGCcuCAGaGGGGCuGGCCcggcuGCAgUCCUGCc -3'
miRNA:   3'- -CGacGUC-CCCCG-CCGGu----UGU-AGGACG- -5'
28905 3' -59.5 NC_006146.1 + 38820 0.67 0.748379
Target:  5'- uCUGCAGccaggcccugagccuGGGGCaGCUcACGUCCaGCa -3'
miRNA:   3'- cGACGUC---------------CCCCGcCGGuUGUAGGaCG- -5'
28905 3' -59.5 NC_006146.1 + 167442 0.67 0.744604
Target:  5'- --gGCGGGGGGUcgGGCgGGCAugcUCCgggGUa -3'
miRNA:   3'- cgaCGUCCCCCG--CCGgUUGU---AGGa--CG- -5'
28905 3' -59.5 NC_006146.1 + 154959 0.67 0.744604
Target:  5'- uGUUGUAGaGGGaGaCGGUCAGCAcggCCUcGCg -3'
miRNA:   3'- -CGACGUC-CCC-C-GCCGGUUGUa--GGA-CG- -5'
28905 3' -59.5 NC_006146.1 + 57140 0.67 0.744604
Target:  5'- ---uCGGGGGGCugguGGCCGACcgCC-GCu -3'
miRNA:   3'- cgacGUCCCCCG----CCGGUUGuaGGaCG- -5'
28905 3' -59.5 NC_006146.1 + 169306 0.67 0.744604
Target:  5'- --gGCGGGGGGUcgGGCgGGCAugcUCCgggGUa -3'
miRNA:   3'- cgaCGUCCCCCG--CCGgUUGU---AGGa--CG- -5'
28905 3' -59.5 NC_006146.1 + 168374 0.67 0.744604
Target:  5'- --gGCGGGGGGUcgGGCgGGCAugcUCCgggGUa -3'
miRNA:   3'- cgaCGUCCCCCG--CCGgUUGU---AGGa--CG- -5'
28905 3' -59.5 NC_006146.1 + 170237 0.67 0.744604
Target:  5'- --gGCGGGGGGUcgGGCgGGCAugcUCCgggGUa -3'
miRNA:   3'- cgaCGUCCCCCG--CCGgUUGU---AGGa--CG- -5'
28905 3' -59.5 NC_006146.1 + 94863 0.67 0.744604
Target:  5'- gGUU-CAGGGGGCGGagauuccacaCGAgGUaCCUGCc -3'
miRNA:   3'- -CGAcGUCCCCCGCCg---------GUUgUA-GGACG- -5'
28905 3' -59.5 NC_006146.1 + 46390 0.67 0.7351
Target:  5'- uGCUGUgugagAGGGGGuUGGCUAGCcUCa-GCg -3'
miRNA:   3'- -CGACG-----UCCCCC-GCCGGUUGuAGgaCG- -5'
28905 3' -59.5 NC_006146.1 + 58961 0.67 0.7351
Target:  5'- uGCUGCAgcccucgaGGGagacGGUGGCCAccuGCAaCCUGg -3'
miRNA:   3'- -CGACGU--------CCC----CCGCCGGU---UGUaGGACg -5'
28905 3' -59.5 NC_006146.1 + 43426 0.67 0.7351
Target:  5'- cGCUGCAuGGcGuuGGCCGACAuggUUCUGUa -3'
miRNA:   3'- -CGACGUcCC-CcgCCGGUUGU---AGGACG- -5'
28905 3' -59.5 NC_006146.1 + 87161 0.67 0.734145
Target:  5'- aCUGCucacggcccacAGGGGGUuguuuuuGGCCAGgGUCCUa- -3'
miRNA:   3'- cGACG-----------UCCCCCG-------CCGGUUgUAGGAcg -5'
28905 3' -59.5 NC_006146.1 + 69636 0.67 0.725512
Target:  5'- --gGUAcuGGGGGCGGCUAAUGggCCcGCg -3'
miRNA:   3'- cgaCGU--CCCCCGCCGGUUGUa-GGaCG- -5'
28905 3' -59.5 NC_006146.1 + 102888 0.67 0.725512
Target:  5'- aGCcGCAGGGGGacgccaggGGCCGugugGCGUggCUGCg -3'
miRNA:   3'- -CGaCGUCCCCCg-------CCGGU----UGUAg-GACG- -5'
28905 3' -59.5 NC_006146.1 + 132811 0.67 0.725512
Target:  5'- aGCUGCAggcGGGGGaugGGUagCAGCAUCUUaGUa -3'
miRNA:   3'- -CGACGU---CCCCCg--CCG--GUUGUAGGA-CG- -5'
28905 3' -59.5 NC_006146.1 + 77901 0.67 0.724548
Target:  5'- cGCUGCuuaacaggcgcagGGGcGGGCGGCCucGCAggugCCggggGUc -3'
miRNA:   3'- -CGACG-------------UCC-CCCGCCGGu-UGUa---GGa---CG- -5'
28905 3' -59.5 NC_006146.1 + 57841 0.67 0.719721
Target:  5'- aGUUGaAGGucaaGGCcaacguggaccccgaGGCCGACGUCCUGCc -3'
miRNA:   3'- -CGACgUCCc---CCG---------------CCGGUUGUAGGACG- -5'
28905 3' -59.5 NC_006146.1 + 157033 0.67 0.719721
Target:  5'- gGCUGCGGGggacgcuggcacaccGGGCcGCCGGgGUCCcuccgGCc -3'
miRNA:   3'- -CGACGUCC---------------CCCGcCGGUUgUAGGa----CG- -5'
28905 3' -59.5 NC_006146.1 + 141644 0.67 0.719721
Target:  5'- gGCUGCGGGggacgcuggcacaccGGGCcGCCGGgGUCCcuccgGCc -3'
miRNA:   3'- -CGACGUCC---------------CCCGcCGGUUgUAGGa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.