miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28905 3' -59.5 NC_006146.1 + 587 0.66 0.754014
Target:  5'- --gGcCGGGGGcGCGGCCcGGCGccagcCCUGCc -3'
miRNA:   3'- cgaC-GUCCCC-CGCCGG-UUGUa----GGACG- -5'
28905 3' -59.5 NC_006146.1 + 1518 0.66 0.754014
Target:  5'- --gGcCGGGGGcGCGGCCcGGCGccagcCCUGCc -3'
miRNA:   3'- cgaC-GUCCCC-CGCCGG-UUGUa----GGACG- -5'
28905 3' -59.5 NC_006146.1 + 2450 0.66 0.754014
Target:  5'- --gGcCGGGGGcGCGGCCcGGCGccagcCCUGCc -3'
miRNA:   3'- cgaC-GUCCCC-CGCCGG-UUGUa----GGACG- -5'
28905 3' -59.5 NC_006146.1 + 3358 0.72 0.418765
Target:  5'- gGCaGCGGGGGGagaaaaucaaCGGCCGcgGCGUCCUa- -3'
miRNA:   3'- -CGaCGUCCCCC----------GCCGGU--UGUAGGAcg -5'
28905 3' -59.5 NC_006146.1 + 3382 0.66 0.754014
Target:  5'- --gGcCGGGGGcGCGGCCcGGCGccagcCCUGCc -3'
miRNA:   3'- cgaC-GUCCCC-CGCCGG-UUGUa----GGACG- -5'
28905 3' -59.5 NC_006146.1 + 14122 0.69 0.626795
Target:  5'- gGCUGCuGGcGGCGGCCuACAgCCagGUg -3'
miRNA:   3'- -CGACGuCCcCCGCCGGuUGUaGGa-CG- -5'
28905 3' -59.5 NC_006146.1 + 14631 0.69 0.58698
Target:  5'- cGCUGCGuGGGGGa-GCuCAugGUgCUGCc -3'
miRNA:   3'- -CGACGU-CCCCCgcCG-GUugUAgGACG- -5'
28905 3' -59.5 NC_006146.1 + 15418 0.66 0.754014
Target:  5'- gGCcuCAGaGGGGCuGGCCcggcuGCAgUCCUGCc -3'
miRNA:   3'- -CGacGUC-CCCCG-CCGGu----UGU-AGGACG- -5'
28905 3' -59.5 NC_006146.1 + 16090 0.66 0.781597
Target:  5'- --gGCAGGGGGUGGgUAuuuaaggaucuAUAUgcCCUGCu -3'
miRNA:   3'- cgaCGUCCCCCGCCgGU-----------UGUA--GGACG- -5'
28905 3' -59.5 NC_006146.1 + 18859 0.67 0.69632
Target:  5'- cGCUGCc-GGGGUGGUgGACGUgCggggGCc -3'
miRNA:   3'- -CGACGucCCCCGCCGgUUGUAgGa---CG- -5'
28905 3' -59.5 NC_006146.1 + 19703 0.73 0.384596
Target:  5'- cCUGCGuccucugguccacGGGGGaggaGGCCGgccgcuaccgccGCAUCCUGCu -3'
miRNA:   3'- cGACGU-------------CCCCCg---CCGGU------------UGUAGGACG- -5'
28905 3' -59.5 NC_006146.1 + 20317 0.76 0.24585
Target:  5'- cCUGCAGGcGGGUgcuggacgauGGCCAGCAgauccgcguguucUCCUGCc -3'
miRNA:   3'- cGACGUCC-CCCG----------CCGGUUGU-------------AGGACG- -5'
28905 3' -59.5 NC_006146.1 + 20811 0.69 0.596904
Target:  5'- gGCUuCAcuGGGGUGGCCAACGgccucuuccCCUGCc -3'
miRNA:   3'- -CGAcGUc-CCCCGCCGGUUGUa--------GGACG- -5'
28905 3' -59.5 NC_006146.1 + 20869 0.69 0.623802
Target:  5'- cGCUGCAGGGGcGCacgaugcuggagcgGGCCAAgG-CCUuCg -3'
miRNA:   3'- -CGACGUCCCC-CG--------------CCGGUUgUaGGAcG- -5'
28905 3' -59.5 NC_006146.1 + 21282 0.66 0.762396
Target:  5'- uGCUgGCGGacgcccggguaaaGGaGGCGGCCAGCcUCCUc- -3'
miRNA:   3'- -CGA-CGUC-------------CC-CCGCCGGUUGuAGGAcg -5'
28905 3' -59.5 NC_006146.1 + 21348 0.68 0.686476
Target:  5'- uCU-CGGaGGGGCuGCCGGCGggcuUCCUGCc -3'
miRNA:   3'- cGAcGUC-CCCCGcCGGUUGU----AGGACG- -5'
28905 3' -59.5 NC_006146.1 + 21693 1.13 0.000743
Target:  5'- uGCUGCAGGGGGCGGCCAACAUCCUGCa -3'
miRNA:   3'- -CGACGUCCCCCGCCGGUUGUAGGACG- -5'
28905 3' -59.5 NC_006146.1 + 24106 0.71 0.490403
Target:  5'- --cGCGGGucgaGGGCGGCUGGCAccgggCCUGUa -3'
miRNA:   3'- cgaCGUCC----CCCGCCGGUUGUa----GGACG- -5'
28905 3' -59.5 NC_006146.1 + 30139 0.74 0.316339
Target:  5'- -aUGCAGGGGGgugggcaUGGCCAcGCAUCCgagaGCg -3'
miRNA:   3'- cgACGUCCCCC-------GCCGGU-UGUAGGa---CG- -5'
28905 3' -59.5 NC_006146.1 + 32806 0.72 0.45741
Target:  5'- cGCU-CGGGGGGUgcacaacccccagccGGcCCGGCGUCCUuGCg -3'
miRNA:   3'- -CGAcGUCCCCCG---------------CC-GGUUGUAGGA-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.