miRNA display CGI


Results 21 - 40 of 164 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28905 3' -59.5 NC_006146.1 + 33139 0.7 0.567233
Target:  5'- cGCUGCcccgcuccggguGGGGGGUGGCCcggcugGGCA-CCgccGCg -3'
miRNA:   3'- -CGACG------------UCCCCCGCCGG------UUGUaGGa--CG- -5'
28905 3' -59.5 NC_006146.1 + 33263 0.73 0.377347
Target:  5'- cGCUGCcccgcuccggguGGGGGGUGGCCcggcugGGCAcCgCUGCg -3'
miRNA:   3'- -CGACG------------UCCCCCGCCGG------UUGUaG-GACG- -5'
28905 3' -59.5 NC_006146.1 + 33385 0.73 0.377347
Target:  5'- cGCUGCcccgcuccggguGGGGGGUGGCCcgccugGGCAcCgCUGCg -3'
miRNA:   3'- -CGACG------------UCCCCCGCCGG------UUGUaG-GACG- -5'
28905 3' -59.5 NC_006146.1 + 38820 0.67 0.748379
Target:  5'- uCUGCAGccaggcccugagccuGGGGCaGCUcACGUCCaGCa -3'
miRNA:   3'- cGACGUC---------------CCCCGcCGGuUGUAGGaCG- -5'
28905 3' -59.5 NC_006146.1 + 40032 0.72 0.418765
Target:  5'- cCUGCuGGGGGCcguaGCCGAC-UCCgGCg -3'
miRNA:   3'- cGACGuCCCCCGc---CGGUUGuAGGaCG- -5'
28905 3' -59.5 NC_006146.1 + 40748 0.67 0.69632
Target:  5'- -gUGCuuGGGGCuGGCCAcggACGUggaCCUGCc -3'
miRNA:   3'- cgACGucCCCCG-CCGGU---UGUA---GGACG- -5'
28905 3' -59.5 NC_006146.1 + 42854 0.73 0.377347
Target:  5'- cUUGCGGGGGGUgacGGUCAGgCAgcUCCUGUa -3'
miRNA:   3'- cGACGUCCCCCG---CCGGUU-GU--AGGACG- -5'
28905 3' -59.5 NC_006146.1 + 43367 0.7 0.567233
Target:  5'- --gGCAGGGGGUGGCuuagcgggggCAGCAgcggCUGCc -3'
miRNA:   3'- cgaCGUCCCCCGCCG----------GUUGUag--GACG- -5'
28905 3' -59.5 NC_006146.1 + 43426 0.67 0.7351
Target:  5'- cGCUGCAuGGcGuuGGCCGACAuggUUCUGUa -3'
miRNA:   3'- -CGACGUcCC-CcgCCGGUUGU---AGGACG- -5'
28905 3' -59.5 NC_006146.1 + 44020 0.72 0.410262
Target:  5'- gGCggGgAGGGGGCGGCCGAgGgcCCcGCu -3'
miRNA:   3'- -CGa-CgUCCCCCGCCGGUUgUa-GGaCG- -5'
28905 3' -59.5 NC_006146.1 + 46079 0.66 0.781597
Target:  5'- uGCUGCAGGGccucGGgGGCgaAGCA-CCgucGCg -3'
miRNA:   3'- -CGACGUCCC----CCgCCGg-UUGUaGGa--CG- -5'
28905 3' -59.5 NC_006146.1 + 46390 0.67 0.7351
Target:  5'- uGCUGUgugagAGGGGGuUGGCUAGCcUCa-GCg -3'
miRNA:   3'- -CGACG-----UCCCCC-GCCGGUUGuAGgaCG- -5'
28905 3' -59.5 NC_006146.1 + 47532 0.66 0.762396
Target:  5'- gGUUGCGGGGccccCGGCCAGCGccagagcUCCcucgGCg -3'
miRNA:   3'- -CGACGUCCCcc--GCCGGUUGU-------AGGa---CG- -5'
28905 3' -59.5 NC_006146.1 + 49383 0.69 0.616818
Target:  5'- --aGCAcGGGGauGCCGuuGUCCUGCg -3'
miRNA:   3'- cgaCGUcCCCCgcCGGUugUAGGACG- -5'
28905 3' -59.5 NC_006146.1 + 50856 0.7 0.547658
Target:  5'- gGCUGguGGGGGaugagaggcguUGGCCAuuGUCCUc- -3'
miRNA:   3'- -CGACguCCCCC-----------GCCGGUugUAGGAcg -5'
28905 3' -59.5 NC_006146.1 + 52707 0.72 0.453818
Target:  5'- gGCgggagGuCAGGGGGCGGCCGGCcagaaagcUCUUGa -3'
miRNA:   3'- -CGa----C-GUCCCCCGCCGGUUGu-------AGGACg -5'
28905 3' -59.5 NC_006146.1 + 53050 0.68 0.67659
Target:  5'- cGCUGUcaucaaguuGGGGagcaacgcGGUGGCCGugGagagCCUGCa -3'
miRNA:   3'- -CGACG---------UCCC--------CCGCCGGUugUa---GGACG- -5'
28905 3' -59.5 NC_006146.1 + 53886 0.7 0.518718
Target:  5'- gGgaGCGGcGGGGCGGCUGGC-UUUUGUg -3'
miRNA:   3'- -CgaCGUC-CCCCGCCGGUUGuAGGACG- -5'
28905 3' -59.5 NC_006146.1 + 55028 0.66 0.790547
Target:  5'- gGCggGCGggauGGGGGUcggGGCCGGgG-CCUGCc -3'
miRNA:   3'- -CGa-CGU----CCCCCG---CCGGUUgUaGGACG- -5'
28905 3' -59.5 NC_006146.1 + 55385 0.67 0.69632
Target:  5'- --cGCccGGGGCaccgaGGCCAGCAUCacgGCg -3'
miRNA:   3'- cgaCGucCCCCG-----CCGGUUGUAGga-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.