miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28905 3' -59.5 NC_006146.1 + 170237 0.67 0.744604
Target:  5'- --gGCGGGGGGUcgGGCgGGCAugcUCCgggGUa -3'
miRNA:   3'- cgaCGUCCCCCG--CCGgUUGU---AGGa--CG- -5'
28905 3' -59.5 NC_006146.1 + 170177 0.66 0.754014
Target:  5'- gGCUG-AGGGGGCucccgagggcggGGCCGGgG-CCUGg -3'
miRNA:   3'- -CGACgUCCCCCG------------CCGGUUgUaGGACg -5'
28905 3' -59.5 NC_006146.1 + 170108 0.74 0.331414
Target:  5'- cGCcGCAGGGGG-GGCCGgcgggGCGUCCcGUc -3'
miRNA:   3'- -CGaCGUCCCCCgCCGGU-----UGUAGGaCG- -5'
28905 3' -59.5 NC_006146.1 + 169306 0.67 0.744604
Target:  5'- --gGCGGGGGGUcgGGCgGGCAugcUCCgggGUa -3'
miRNA:   3'- cgaCGUCCCCCG--CCGgUUGU---AGGa--CG- -5'
28905 3' -59.5 NC_006146.1 + 169246 0.66 0.754014
Target:  5'- gGCUG-AGGGGGCucccgagggcggGGCCGGgG-CCUGg -3'
miRNA:   3'- -CGACgUCCCCCG------------CCGGUUgUaGGACg -5'
28905 3' -59.5 NC_006146.1 + 169178 0.77 0.235082
Target:  5'- cCUGCAGGGGG-GGCCGgcgggGCGUCCcGUc -3'
miRNA:   3'- cGACGUCCCCCgCCGGU-----UGUAGGaCG- -5'
28905 3' -59.5 NC_006146.1 + 168374 0.67 0.744604
Target:  5'- --gGCGGGGGGUcgGGCgGGCAugcUCCgggGUa -3'
miRNA:   3'- cgaCGUCCCCCG--CCGgUUGU---AGGa--CG- -5'
28905 3' -59.5 NC_006146.1 + 168314 0.66 0.754014
Target:  5'- gGCUG-AGGGGGCucccgagggcggGGCCGGgG-CCUGg -3'
miRNA:   3'- -CGACgUCCCCCG------------CCGGUUgUaGGACg -5'
28905 3' -59.5 NC_006146.1 + 168246 0.77 0.235082
Target:  5'- cCUGCAGGGGG-GGCCGgcgggGCGUCCcGUc -3'
miRNA:   3'- cGACGUCCCCCgCCGGU-----UGUAGGaCG- -5'
28905 3' -59.5 NC_006146.1 + 167442 0.67 0.744604
Target:  5'- --gGCGGGGGGUcgGGCgGGCAugcUCCgggGUa -3'
miRNA:   3'- cgaCGUCCCCCG--CCGgUUGU---AGGa--CG- -5'
28905 3' -59.5 NC_006146.1 + 167382 0.66 0.754014
Target:  5'- gGCUG-AGGGGGCucccgagggcggGGCCGGgG-CCUGg -3'
miRNA:   3'- -CGACgUCCCCCG------------CCGGUUgUaGGACg -5'
28905 3' -59.5 NC_006146.1 + 167381 0.69 0.626795
Target:  5'- cGCUGaagaAGGGGGCaaaGUCAuccguCAUCuCUGCg -3'
miRNA:   3'- -CGACg---UCCCCCGc--CGGUu----GUAG-GACG- -5'
28905 3' -59.5 NC_006146.1 + 167314 0.77 0.235082
Target:  5'- cCUGCAGGGGG-GGCCGgcgggGCGUCCcGUc -3'
miRNA:   3'- cGACGUCCCCCgCCGGU-----UGUAGGaCG- -5'
28905 3' -59.5 NC_006146.1 + 161744 0.67 0.706113
Target:  5'- --aGCccgGGGGuGGCGGCUGAgGUCCgaggggGCg -3'
miRNA:   3'- cgaCG---UCCC-CCGCCGGUUgUAGGa-----CG- -5'
28905 3' -59.5 NC_006146.1 + 161240 0.66 0.799362
Target:  5'- -aUGUGGGGGGCaguauaagGGCCcgucccaacgcGGCAUCCacGCg -3'
miRNA:   3'- cgACGUCCCCCG--------CCGG-----------UUGUAGGa-CG- -5'
28905 3' -59.5 NC_006146.1 + 157033 0.67 0.719721
Target:  5'- gGCUGCGGGggacgcuggcacaccGGGCcGCCGGgGUCCcuccgGCc -3'
miRNA:   3'- -CGACGUCC---------------CCCGcCGGUUgUAGGa----CG- -5'
28905 3' -59.5 NC_006146.1 + 156835 0.66 0.771604
Target:  5'- --gGguGGGGaGUGGCCAgggaggacggaggGCcuggCCUGCg -3'
miRNA:   3'- cgaCguCCCC-CGCCGGU-------------UGua--GGACG- -5'
28905 3' -59.5 NC_006146.1 + 154959 0.67 0.744604
Target:  5'- uGUUGUAGaGGGaGaCGGUCAGCAcggCCUcGCg -3'
miRNA:   3'- -CGACGUC-CCC-C-GCCGGUUGUa--GGA-CG- -5'
28905 3' -59.5 NC_006146.1 + 153955 0.67 0.719721
Target:  5'- gGCUGCGGGggacgcuggcacaccGGGCcGCCGGgGUCCcuccgGCc -3'
miRNA:   3'- -CGACGUCC---------------CCCGcCGGUUgUAGGa----CG- -5'
28905 3' -59.5 NC_006146.1 + 153757 0.66 0.771604
Target:  5'- --gGguGGGGaGUGGCCAgggaggacggaggGCcuggCCUGCg -3'
miRNA:   3'- cgaCguCCCC-CGCCGGU-------------UGua--GGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.