Results 21 - 40 of 164 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28905 | 3' | -59.5 | NC_006146.1 | + | 136614 | 0.74 | 0.353854 |
Target: 5'- cGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3' miRNA: 3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5' |
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28905 | 3' | -59.5 | NC_006146.1 | + | 136335 | 0.74 | 0.353854 |
Target: 5'- cGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3' miRNA: 3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5' |
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28905 | 3' | -59.5 | NC_006146.1 | + | 135499 | 0.74 | 0.353854 |
Target: 5'- cGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3' miRNA: 3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5' |
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28905 | 3' | -59.5 | NC_006146.1 | + | 169178 | 0.77 | 0.235082 |
Target: 5'- cCUGCAGGGGG-GGCCGgcgggGCGUCCcGUc -3' miRNA: 3'- cGACGUCCCCCgCCGGU-----UGUAGGaCG- -5' |
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28905 | 3' | -59.5 | NC_006146.1 | + | 135127 | 0.73 | 0.377347 |
Target: 5'- uGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3' miRNA: 3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5' |
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28905 | 3' | -59.5 | NC_006146.1 | + | 137171 | 0.74 | 0.353854 |
Target: 5'- cGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3' miRNA: 3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5' |
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28905 | 3' | -59.5 | NC_006146.1 | + | 136149 | 0.74 | 0.353854 |
Target: 5'- cGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3' miRNA: 3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5' |
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28905 | 3' | -59.5 | NC_006146.1 | + | 168246 | 0.77 | 0.235082 |
Target: 5'- cCUGCAGGGGG-GGCCGgcgggGCGUCCcGUc -3' miRNA: 3'- cGACGUCCCCCgCCGGU-----UGUAGGaCG- -5' |
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28905 | 3' | -59.5 | NC_006146.1 | + | 137078 | 0.74 | 0.353854 |
Target: 5'- cGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3' miRNA: 3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5' |
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28905 | 3' | -59.5 | NC_006146.1 | + | 167314 | 0.77 | 0.235082 |
Target: 5'- cCUGCAGGGGG-GGCCGgcgggGCGUCCcGUc -3' miRNA: 3'- cGACGUCCCCCgCCGGU-----UGUAGGaCG- -5' |
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28905 | 3' | -59.5 | NC_006146.1 | + | 136242 | 0.74 | 0.353854 |
Target: 5'- cGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3' miRNA: 3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5' |
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28905 | 3' | -59.5 | NC_006146.1 | + | 136799 | 0.74 | 0.353854 |
Target: 5'- cGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3' miRNA: 3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5' |
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28905 | 3' | -59.5 | NC_006146.1 | + | 135870 | 0.74 | 0.353854 |
Target: 5'- cGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3' miRNA: 3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5' |
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28905 | 3' | -59.5 | NC_006146.1 | + | 135592 | 0.74 | 0.353854 |
Target: 5'- cGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3' miRNA: 3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5' |
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28905 | 3' | -59.5 | NC_006146.1 | + | 135220 | 0.74 | 0.353854 |
Target: 5'- cGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3' miRNA: 3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5' |
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28905 | 3' | -59.5 | NC_006146.1 | + | 125995 | 0.76 | 0.264293 |
Target: 5'- gGCUGCGaggcuugggaguGGGGGCGGUgGGC-UUCUGCu -3' miRNA: 3'- -CGACGU------------CCCCCGCCGgUUGuAGGACG- -5' |
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28905 | 3' | -59.5 | NC_006146.1 | + | 44020 | 0.72 | 0.410262 |
Target: 5'- gGCggGgAGGGGGCGGCCGAgGgcCCcGCu -3' miRNA: 3'- -CGa-CgUCCCCCGCCGGUUgUa-GGaCG- -5' |
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28905 | 3' | -59.5 | NC_006146.1 | + | 33263 | 0.73 | 0.377347 |
Target: 5'- cGCUGCcccgcuccggguGGGGGGUGGCCcggcugGGCAcCgCUGCg -3' miRNA: 3'- -CGACG------------UCCCCCGCCGG------UUGUaG-GACG- -5' |
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28905 | 3' | -59.5 | NC_006146.1 | + | 137543 | 0.74 | 0.353854 |
Target: 5'- cGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3' miRNA: 3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5' |
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28905 | 3' | -59.5 | NC_006146.1 | + | 137264 | 0.74 | 0.353854 |
Target: 5'- cGCUccgGCGGGGGGUGGCCGggccgcugccGgGUCCgcUGCc -3' miRNA: 3'- -CGA---CGUCCCCCGCCGGU----------UgUAGG--ACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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