miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28905 5' -56.6 NC_006146.1 + 137490 0.66 0.909451
Target:  5'- cGGCGgcGCAGCggugcccaGGCgGGCCACCCc-- -3'
miRNA:   3'- aCUGU--UGUUGag------CCG-CCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 83640 0.66 0.909451
Target:  5'- gUGGCGGgGGCUCuGCgGGCCAgaCCUCc -3'
miRNA:   3'- -ACUGUUgUUGAGcCG-CCGGUg-GGAGa -5'
28905 5' -56.6 NC_006146.1 + 53209 0.66 0.909451
Target:  5'- gGGCGGCGugccaaACUCcGCgGGCCuuCCCUCUc -3'
miRNA:   3'- aCUGUUGU------UGAGcCG-CCGGu-GGGAGA- -5'
28905 5' -56.6 NC_006146.1 + 118178 0.66 0.909451
Target:  5'- cUGGuCAAgAGCUuucUGGcCGGCCGCCCcCUg -3'
miRNA:   3'- -ACU-GUUgUUGA---GCC-GCCGGUGGGaGA- -5'
28905 5' -56.6 NC_006146.1 + 10522 0.66 0.909451
Target:  5'- -uGCGA-GACUgGGCGGCCugCCa-- -3'
miRNA:   3'- acUGUUgUUGAgCCGCCGGugGGaga -5'
28905 5' -56.6 NC_006146.1 + 126159 0.66 0.909451
Target:  5'- cGACAaccACAGC-CGcccGCGGCCACCgcaUCa -3'
miRNA:   3'- aCUGU---UGUUGaGC---CGCCGGUGGg--AGa -5'
28905 5' -56.6 NC_006146.1 + 110293 0.66 0.909451
Target:  5'- aUGAUGGC--CUCGGCGuaggcguucaucGCCGCCCUg- -3'
miRNA:   3'- -ACUGUUGuuGAGCCGC------------CGGUGGGAga -5'
28905 5' -56.6 NC_006146.1 + 116165 0.66 0.908849
Target:  5'- cGGCAGCGACcugagucUCcccuCGGCCGCCCUg- -3'
miRNA:   3'- aCUGUUGUUG-------AGcc--GCCGGUGGGAga -5'
28905 5' -56.6 NC_006146.1 + 59073 0.66 0.903329
Target:  5'- gGGCGACgAGCUCuuGCugGGCCuCCCUCg -3'
miRNA:   3'- aCUGUUG-UUGAGc-CG--CCGGuGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 68292 0.66 0.903329
Target:  5'- gUGACAuaaACAAaacaGGCGGaaGCCCUCc -3'
miRNA:   3'- -ACUGU---UGUUgag-CCGCCggUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 47010 0.66 0.903329
Target:  5'- cGGCAGCGgcccggucggACUC-GCGGgCGCCCUg- -3'
miRNA:   3'- aCUGUUGU----------UGAGcCGCCgGUGGGAga -5'
28905 5' -56.6 NC_006146.1 + 47344 0.66 0.903329
Target:  5'- aGACAuc--CUCGGCacgugcuacggGGCCACCgUCa -3'
miRNA:   3'- aCUGUuguuGAGCCG-----------CCGGUGGgAGa -5'
28905 5' -56.6 NC_006146.1 + 6593 0.66 0.903329
Target:  5'- cGACAACAGCaaCGGCaGUgGCCC-Cg -3'
miRNA:   3'- aCUGUUGUUGa-GCCGcCGgUGGGaGa -5'
28905 5' -56.6 NC_006146.1 + 93265 0.66 0.903329
Target:  5'- cGAUguAGCcGCUCGcGgGGUUGCCCUCg -3'
miRNA:   3'- aCUG--UUGuUGAGC-CgCCGGUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 2227 0.66 0.896978
Target:  5'- gGGCGGCGACaaUCGcCGcGCC-CCCUCa -3'
miRNA:   3'- aCUGUUGUUG--AGCcGC-CGGuGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 150613 0.66 0.896978
Target:  5'- aUGugGGCGAuCUUGGCgaucucGGCCACCUcCa -3'
miRNA:   3'- -ACugUUGUU-GAGCCG------CCGGUGGGaGa -5'
28905 5' -56.6 NC_006146.1 + 120985 0.66 0.896978
Target:  5'- gGACcgaGugGcCUCGGCGGCCuccgacuaCCUCUc -3'
miRNA:   3'- aCUG---UugUuGAGCCGCCGGug------GGAGA- -5'
28905 5' -56.6 NC_006146.1 + 61601 0.66 0.896978
Target:  5'- -uGCAGCGGCcgCGGCcggGGCCGagauCCCUCc -3'
miRNA:   3'- acUGUUGUUGa-GCCG---CCGGU----GGGAGa -5'
28905 5' -56.6 NC_006146.1 + 364 0.66 0.896978
Target:  5'- gGGCGGCGACaaUCGcCGcGCC-CCCUCa -3'
miRNA:   3'- aCUGUUGUUG--AGCcGC-CGGuGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 1295 0.66 0.896978
Target:  5'- gGGCGGCGACaaUCGcCGcGCC-CCCUCa -3'
miRNA:   3'- aCUGUUGUUG--AGCcGC-CGGuGGGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.