Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 83640 | 0.66 | 0.909451 |
Target: 5'- gUGGCGGgGGCUCuGCgGGCCAgaCCUCc -3' miRNA: 3'- -ACUGUUgUUGAGcCG-CCGGUg-GGAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 1295 | 0.66 | 0.896978 |
Target: 5'- gGGCGGCGACaaUCGcCGcGCC-CCCUCa -3' miRNA: 3'- aCUGUUGUUG--AGCcGC-CGGuGGGAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 364 | 0.66 | 0.896978 |
Target: 5'- gGGCGGCGACaaUCGcCGcGCC-CCCUCa -3' miRNA: 3'- aCUGUUGUUG--AGCcGC-CGGuGGGAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 61601 | 0.66 | 0.896978 |
Target: 5'- -uGCAGCGGCcgCGGCcggGGCCGagauCCCUCc -3' miRNA: 3'- acUGUUGUUGa-GCCG---CCGGU----GGGAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 115409 | 0.66 | 0.890399 |
Target: 5'- aGGaGGCAGCU-GGCGGCCgGgCCUCg -3' miRNA: 3'- aCUgUUGUUGAgCCGCCGG-UgGGAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 35757 | 0.66 | 0.876574 |
Target: 5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3' miRNA: 3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 35664 | 0.66 | 0.876574 |
Target: 5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3' miRNA: 3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 35571 | 0.66 | 0.876574 |
Target: 5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3' miRNA: 3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 35478 | 0.66 | 0.876574 |
Target: 5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3' miRNA: 3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 2227 | 0.66 | 0.896978 |
Target: 5'- gGGCGGCGACaaUCGcCGcGCC-CCCUCa -3' miRNA: 3'- aCUGUUGUUG--AGCcGC-CGGuGGGAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 3159 | 0.66 | 0.896978 |
Target: 5'- gGGCGGCGACaaUCGcCGcGCC-CCCUCa -3' miRNA: 3'- aCUGUUGUUG--AGCcGC-CGGuGGGAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 65060 | 0.66 | 0.896978 |
Target: 5'- cGGCAcuGCGucuACUCGGCGGCgCggggcaggagggGCCCUa- -3' miRNA: 3'- aCUGU--UGU---UGAGCCGCCG-G------------UGGGAga -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 110293 | 0.66 | 0.909451 |
Target: 5'- aUGAUGGC--CUCGGCGuaggcguucaucGCCGCCCUg- -3' miRNA: 3'- -ACUGUUGuuGAGCCGC------------CGGUGGGAga -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 126159 | 0.66 | 0.909451 |
Target: 5'- cGACAaccACAGC-CGcccGCGGCCACCgcaUCa -3' miRNA: 3'- aCUGU---UGUUGaGC---CGCCGGUGGg--AGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 10522 | 0.66 | 0.909451 |
Target: 5'- -uGCGA-GACUgGGCGGCCugCCa-- -3' miRNA: 3'- acUGUUgUUGAgCCGCCGGugGGaga -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 118178 | 0.66 | 0.909451 |
Target: 5'- cUGGuCAAgAGCUuucUGGcCGGCCGCCCcCUg -3' miRNA: 3'- -ACU-GUUgUUGA---GCC-GCCGGUGGGaGA- -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 116165 | 0.66 | 0.908849 |
Target: 5'- cGGCAGCGACcugagucUCcccuCGGCCGCCCUg- -3' miRNA: 3'- aCUGUUGUUG-------AGcc--GCCGGUGGGAga -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 47344 | 0.66 | 0.903329 |
Target: 5'- aGACAuc--CUCGGCacgugcuacggGGCCACCgUCa -3' miRNA: 3'- aCUGUuguuGAGCCG-----------CCGGUGGgAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 6593 | 0.66 | 0.903329 |
Target: 5'- cGACAACAGCaaCGGCaGUgGCCC-Cg -3' miRNA: 3'- aCUGUUGUUGa-GCCGcCGgUGGGaGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 120985 | 0.66 | 0.896978 |
Target: 5'- gGACcgaGugGcCUCGGCGGCCuccgacuaCCUCUc -3' miRNA: 3'- aCUG---UugUuGAGCCGCCGGug------GGAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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