miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28905 5' -56.6 NC_006146.1 + 68038 0.72 0.588869
Target:  5'- cGGCcACGACcaggUGGCGGCUGCCCUg- -3'
miRNA:   3'- aCUGuUGUUGa---GCCGCCGGUGGGAga -5'
28905 5' -56.6 NC_006146.1 + 56857 0.72 0.598974
Target:  5'- gGGCGGCAGCUuuggcuggggcUGGCGGCC-CCCg-- -3'
miRNA:   3'- aCUGUUGUUGA-----------GCCGCCGGuGGGaga -5'
28905 5' -56.6 NC_006146.1 + 125096 0.71 0.639563
Target:  5'- aGGCGGCcgUggCGGCGGCCuuCCUCg -3'
miRNA:   3'- aCUGUUGuuGa-GCCGCCGGugGGAGa -5'
28905 5' -56.6 NC_006146.1 + 128821 0.71 0.659854
Target:  5'- gGGCGGCGGCagaGGgGGUCACCCUg- -3'
miRNA:   3'- aCUGUUGUUGag-CCgCCGGUGGGAga -5'
28905 5' -56.6 NC_006146.1 + 73045 0.71 0.66997
Target:  5'- -cACGGCccgGGgUCGGCGGCC-CCCUCc -3'
miRNA:   3'- acUGUUG---UUgAGCCGCCGGuGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 46369 0.71 0.66997
Target:  5'- cGACAGCAGCUCccccaGGCCcccguCCCUCg -3'
miRNA:   3'- aCUGUUGUUGAGccg--CCGGu----GGGAGa -5'
28905 5' -56.6 NC_006146.1 + 113112 0.7 0.680056
Target:  5'- gUGGCAACAuGCagGGCGGCUGCCUcaaaUCUc -3'
miRNA:   3'- -ACUGUUGU-UGagCCGCCGGUGGG----AGA- -5'
28905 5' -56.6 NC_006146.1 + 44161 0.7 0.71894
Target:  5'- uUGGCAcagucgcACAACUgGGCGG-UGCCCUCc -3'
miRNA:   3'- -ACUGU-------UGUUGAgCCGCCgGUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 20420 0.69 0.73945
Target:  5'- cGACAgggACGGCUaccaGGgGGCCACUgUCa -3'
miRNA:   3'- aCUGU---UGUUGAg---CCgCCGGUGGgAGa -5'
28905 5' -56.6 NC_006146.1 + 45580 0.69 0.758607
Target:  5'- -cGC-GCAGC-CaGGCGGCCugCCUCg -3'
miRNA:   3'- acUGuUGUUGaG-CCGCCGGugGGAGa -5'
28905 5' -56.6 NC_006146.1 + 104505 0.69 0.768024
Target:  5'- gGACAagcGCAGCUauGUGGagaaCGCCCUCa -3'
miRNA:   3'- aCUGU---UGUUGAgcCGCCg---GUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 43492 0.69 0.768024
Target:  5'- uUGACAcCGGCUcCGGCGGCgggGCCCa-- -3'
miRNA:   3'- -ACUGUuGUUGA-GCCGCCGg--UGGGaga -5'
28905 5' -56.6 NC_006146.1 + 158821 0.69 0.777323
Target:  5'- aGGCAcACGGC-CGG-GGCCcgGCCCUCg -3'
miRNA:   3'- aCUGU-UGUUGaGCCgCCGG--UGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 119120 0.69 0.777323
Target:  5'- gUGGCug-GACUCGGCucugggcagagaGGCCACCUUUUa -3'
miRNA:   3'- -ACUGuugUUGAGCCG------------CCGGUGGGAGA- -5'
28905 5' -56.6 NC_006146.1 + 43278 0.68 0.786493
Target:  5'- aGGCAGCgGGC-CGGCGguGCCGCCCa-- -3'
miRNA:   3'- aCUGUUG-UUGaGCCGC--CGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 1958 0.68 0.795526
Target:  5'- cGAUcAgAACUCGGCcuguccacgGGCC-CCCUCg -3'
miRNA:   3'- aCUGuUgUUGAGCCG---------CCGGuGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 67933 0.68 0.803533
Target:  5'- cGugGAgUAugUCccggaugGGCGGCUGCCCUCg -3'
miRNA:   3'- aCugUU-GUugAG-------CCGCCGGUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 76868 0.68 0.804415
Target:  5'- cGGCGGC-GCUCGG-GGCCguGCCC-CUg -3'
miRNA:   3'- aCUGUUGuUGAGCCgCCGG--UGGGaGA- -5'
28905 5' -56.6 NC_006146.1 + 116649 0.68 0.804415
Target:  5'- aUGGCcACaAACUgGGCGGCCAUCUcgUCc -3'
miRNA:   3'- -ACUGuUG-UUGAgCCGCCGGUGGG--AGa -5'
28905 5' -56.6 NC_006146.1 + 118456 0.68 0.804415
Target:  5'- cGGCuACAACggGGUGGCCcaguucAUCCUCUa -3'
miRNA:   3'- aCUGuUGUUGagCCGCCGG------UGGGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.