miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28905 5' -56.6 NC_006146.1 + 3159 0.66 0.896978
Target:  5'- gGGCGGCGACaaUCGcCGcGCC-CCCUCa -3'
miRNA:   3'- aCUGUUGUUG--AGCcGC-CGGuGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 2227 0.66 0.896978
Target:  5'- gGGCGGCGACaaUCGcCGcGCC-CCCUCa -3'
miRNA:   3'- aCUGUUGUUG--AGCcGC-CGGuGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 115409 0.66 0.890399
Target:  5'- aGGaGGCAGCU-GGCGGCCgGgCCUCg -3'
miRNA:   3'- aCUgUUGUUGAgCCGCCGG-UgGGAGa -5'
28905 5' -56.6 NC_006146.1 + 49672 0.66 0.883597
Target:  5'- gGGCAGgGggGCUaUGGCGGCgucguccuccucCACCCUCUc -3'
miRNA:   3'- aCUGUUgU--UGA-GCCGCCG------------GUGGGAGA- -5'
28905 5' -56.6 NC_006146.1 + 33713 0.66 0.876574
Target:  5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3'
miRNA:   3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 34363 0.66 0.876574
Target:  5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3'
miRNA:   3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 33527 0.66 0.876574
Target:  5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3'
miRNA:   3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 33434 0.66 0.876574
Target:  5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3'
miRNA:   3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 33341 0.66 0.876574
Target:  5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3'
miRNA:   3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 33620 0.66 0.876574
Target:  5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3'
miRNA:   3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 34456 0.66 0.876574
Target:  5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3'
miRNA:   3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 35385 0.66 0.876574
Target:  5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3'
miRNA:   3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 35292 0.66 0.876574
Target:  5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3'
miRNA:   3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 35199 0.66 0.876574
Target:  5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3'
miRNA:   3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 35106 0.66 0.876574
Target:  5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3'
miRNA:   3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 35013 0.66 0.876574
Target:  5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3'
miRNA:   3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 34828 0.66 0.876574
Target:  5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3'
miRNA:   3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 34735 0.66 0.876574
Target:  5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3'
miRNA:   3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 34642 0.66 0.876574
Target:  5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3'
miRNA:   3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 34549 0.66 0.876574
Target:  5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3'
miRNA:   3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.