Results 41 - 60 of 119 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 35478 | 0.66 | 0.876574 |
Target: 5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3' miRNA: 3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5' |
|||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 35664 | 0.66 | 0.876574 |
Target: 5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3' miRNA: 3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5' |
|||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 35571 | 0.66 | 0.876574 |
Target: 5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3' miRNA: 3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5' |
|||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 34642 | 0.66 | 0.876574 |
Target: 5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3' miRNA: 3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5' |
|||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 34270 | 0.66 | 0.876574 |
Target: 5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3' miRNA: 3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5' |
|||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 34363 | 0.66 | 0.876574 |
Target: 5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3' miRNA: 3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5' |
|||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 34828 | 0.66 | 0.876574 |
Target: 5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3' miRNA: 3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5' |
|||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 34735 | 0.66 | 0.876574 |
Target: 5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3' miRNA: 3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5' |
|||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 34456 | 0.66 | 0.876574 |
Target: 5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3' miRNA: 3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5' |
|||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 34549 | 0.66 | 0.876574 |
Target: 5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3' miRNA: 3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5' |
|||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 61386 | 0.67 | 0.870071 |
Target: 5'- gGACcGgAGCUCuacaaucccuuccacGUGGCCGCCCUCa -3' miRNA: 3'- aCUGuUgUUGAGc--------------CGCCGGUGGGAGa -5' |
|||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 160366 | 0.67 | 0.869337 |
Target: 5'- cUGGCGucuCAGCgcccUUGGCaGGCCGCCCa-- -3' miRNA: 3'- -ACUGUu--GUUG----AGCCG-CCGGUGGGaga -5' |
|||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 118354 | 0.67 | 0.869337 |
Target: 5'- cGugAACAucuaccGCUCGGCGGagAUCUUCg -3' miRNA: 3'- aCugUUGU------UGAGCCGCCggUGGGAGa -5' |
|||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 130302 | 0.67 | 0.869337 |
Target: 5'- cGGCGGCAug-CGGagguuCGGCCGCCCa-- -3' miRNA: 3'- aCUGUUGUugaGCC-----GCCGGUGGGaga -5' |
|||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 124716 | 0.67 | 0.869337 |
Target: 5'- aGAUAGaGACUCG--GGCCGCUCUCUg -3' miRNA: 3'- aCUGUUgUUGAGCcgCCGGUGGGAGA- -5' |
|||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 114890 | 0.67 | 0.869337 |
Target: 5'- aGGCAaaaACGACUCugggacgcuGGCuGGUCACCgUCUa -3' miRNA: 3'- aCUGU---UGUUGAG---------CCG-CCGGUGGgAGA- -5' |
|||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 13057 | 0.67 | 0.869337 |
Target: 5'- aGGCGGC-GCUCGGUGcCCGucCCCUCc -3' miRNA: 3'- aCUGUUGuUGAGCCGCcGGU--GGGAGa -5' |
|||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 146273 | 0.67 | 0.861891 |
Target: 5'- gGACGcGCGACgUGGCGGCCccaguggaGCUCUCc -3' miRNA: 3'- aCUGU-UGUUGaGCCGCCGG--------UGGGAGa -5' |
|||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 15089 | 0.67 | 0.861891 |
Target: 5'- cUGACucaccuguuUGACUCGGUGGCC-CCCa-- -3' miRNA: 3'- -ACUGuu-------GUUGAGCCGCCGGuGGGaga -5' |
|||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 15186 | 0.67 | 0.861891 |
Target: 5'- aGGC--CGACUgcGCGGCCGCCUUCa -3' miRNA: 3'- aCUGuuGUUGAgcCGCCGGUGGGAGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home