Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28905 | 5' | -56.6 | NC_006146.1 | + | 364 | 0.66 | 0.896978 |
Target: 5'- gGGCGGCGACaaUCGcCGcGCC-CCCUCa -3' miRNA: 3'- aCUGUUGUUG--AGCcGC-CGGuGGGAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 1295 | 0.66 | 0.896978 |
Target: 5'- gGGCGGCGACaaUCGcCGcGCC-CCCUCa -3' miRNA: 3'- aCUGUUGUUG--AGCcGC-CGGuGGGAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 1958 | 0.68 | 0.795526 |
Target: 5'- cGAUcAgAACUCGGCcuguccacgGGCC-CCCUCg -3' miRNA: 3'- aCUGuUgUUGAGCCG---------CCGGuGGGAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 2227 | 0.66 | 0.896978 |
Target: 5'- gGGCGGCGACaaUCGcCGcGCC-CCCUCa -3' miRNA: 3'- aCUGUUGUUG--AGCcGC-CGGuGGGAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 3159 | 0.66 | 0.896978 |
Target: 5'- gGGCGGCGACaaUCGcCGcGCC-CCCUCa -3' miRNA: 3'- aCUGUUGUUG--AGCcGC-CGGuGGGAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 6593 | 0.66 | 0.903329 |
Target: 5'- cGACAACAGCaaCGGCaGUgGCCC-Cg -3' miRNA: 3'- aCUGUUGUUGa-GCCGcCGgUGGGaGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 10522 | 0.66 | 0.909451 |
Target: 5'- -uGCGA-GACUgGGCGGCCugCCa-- -3' miRNA: 3'- acUGUUgUUGAgCCGCCGGugGGaga -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 13040 | 0.73 | 0.528133 |
Target: 5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3' miRNA: 3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 13057 | 0.67 | 0.869337 |
Target: 5'- aGGCGGC-GCUCGGUGcCCGucCCCUCc -3' miRNA: 3'- aCUGUUGuUGAGCCGCcGGU--GGGAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 15089 | 0.67 | 0.861891 |
Target: 5'- cUGACucaccuguuUGACUCGGUGGCC-CCCa-- -3' miRNA: 3'- -ACUGuu-------GUUGAGCCGCCGGuGGGaga -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 15186 | 0.67 | 0.861891 |
Target: 5'- aGGC--CGACUgcGCGGCCGCCUUCa -3' miRNA: 3'- aCUGuuGUUGAgcCGCCGGUGGGAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 16118 | 0.73 | 0.528133 |
Target: 5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3' miRNA: 3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 19196 | 0.73 | 0.528133 |
Target: 5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3' miRNA: 3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 20420 | 0.69 | 0.73945 |
Target: 5'- cGACAgggACGGCUaccaGGgGGCCACUgUCa -3' miRNA: 3'- aCUGU---UGUUGAg---CCgCCGGUGGgAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 21729 | 1.07 | 0.003644 |
Target: 5'- uUGACAACAACUCGGCGGCCACCCUCUc -3' miRNA: 3'- -ACUGUUGUUGAGCCGCCGGUGGGAGA- -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 22274 | 0.73 | 0.528133 |
Target: 5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3' miRNA: 3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 23535 | 0.68 | 0.813149 |
Target: 5'- gGACuccCGugUCuGGCGGCCGCCgaCa -3' miRNA: 3'- aCUGuu-GUugAG-CCGCCGGUGGgaGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 25352 | 0.73 | 0.528133 |
Target: 5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3' miRNA: 3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 28430 | 0.73 | 0.528133 |
Target: 5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3' miRNA: 3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5' |
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28905 | 5' | -56.6 | NC_006146.1 | + | 33341 | 0.66 | 0.876574 |
Target: 5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3' miRNA: 3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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