miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28905 5' -56.6 NC_006146.1 + 364 0.66 0.896978
Target:  5'- gGGCGGCGACaaUCGcCGcGCC-CCCUCa -3'
miRNA:   3'- aCUGUUGUUG--AGCcGC-CGGuGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 1295 0.66 0.896978
Target:  5'- gGGCGGCGACaaUCGcCGcGCC-CCCUCa -3'
miRNA:   3'- aCUGUUGUUG--AGCcGC-CGGuGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 1958 0.68 0.795526
Target:  5'- cGAUcAgAACUCGGCcuguccacgGGCC-CCCUCg -3'
miRNA:   3'- aCUGuUgUUGAGCCG---------CCGGuGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 2227 0.66 0.896978
Target:  5'- gGGCGGCGACaaUCGcCGcGCC-CCCUCa -3'
miRNA:   3'- aCUGUUGUUG--AGCcGC-CGGuGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 3159 0.66 0.896978
Target:  5'- gGGCGGCGACaaUCGcCGcGCC-CCCUCa -3'
miRNA:   3'- aCUGUUGUUG--AGCcGC-CGGuGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 6593 0.66 0.903329
Target:  5'- cGACAACAGCaaCGGCaGUgGCCC-Cg -3'
miRNA:   3'- aCUGUUGUUGa-GCCGcCGgUGGGaGa -5'
28905 5' -56.6 NC_006146.1 + 10522 0.66 0.909451
Target:  5'- -uGCGA-GACUgGGCGGCCugCCa-- -3'
miRNA:   3'- acUGUUgUUGAgCCGCCGGugGGaga -5'
28905 5' -56.6 NC_006146.1 + 13040 0.73 0.528133
Target:  5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3'
miRNA:   3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 13057 0.67 0.869337
Target:  5'- aGGCGGC-GCUCGGUGcCCGucCCCUCc -3'
miRNA:   3'- aCUGUUGuUGAGCCGCcGGU--GGGAGa -5'
28905 5' -56.6 NC_006146.1 + 15089 0.67 0.861891
Target:  5'- cUGACucaccuguuUGACUCGGUGGCC-CCCa-- -3'
miRNA:   3'- -ACUGuu-------GUUGAGCCGCCGGuGGGaga -5'
28905 5' -56.6 NC_006146.1 + 15186 0.67 0.861891
Target:  5'- aGGC--CGACUgcGCGGCCGCCUUCa -3'
miRNA:   3'- aCUGuuGUUGAgcCGCCGGUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 16118 0.73 0.528133
Target:  5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3'
miRNA:   3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 19196 0.73 0.528133
Target:  5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3'
miRNA:   3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 20420 0.69 0.73945
Target:  5'- cGACAgggACGGCUaccaGGgGGCCACUgUCa -3'
miRNA:   3'- aCUGU---UGUUGAg---CCgCCGGUGGgAGa -5'
28905 5' -56.6 NC_006146.1 + 21729 1.07 0.003644
Target:  5'- uUGACAACAACUCGGCGGCCACCCUCUc -3'
miRNA:   3'- -ACUGUUGUUGAGCCGCCGGUGGGAGA- -5'
28905 5' -56.6 NC_006146.1 + 22274 0.73 0.528133
Target:  5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3'
miRNA:   3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 23535 0.68 0.813149
Target:  5'- gGACuccCGugUCuGGCGGCCGCCgaCa -3'
miRNA:   3'- aCUGuu-GUugAG-CCGCCGGUGGgaGa -5'
28905 5' -56.6 NC_006146.1 + 25352 0.73 0.528133
Target:  5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3'
miRNA:   3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 28430 0.73 0.528133
Target:  5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3'
miRNA:   3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 33341 0.66 0.876574
Target:  5'- gGGCAGCgGACcCGGCagcggcccGGCCACCCc-- -3'
miRNA:   3'- aCUGUUG-UUGaGCCG--------CCGGUGGGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.