miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28905 5' -56.6 NC_006146.1 + 160366 0.67 0.869337
Target:  5'- cUGGCGucuCAGCgcccUUGGCaGGCCGCCCa-- -3'
miRNA:   3'- -ACUGUu--GUUG----AGCCG-CCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 158821 0.69 0.777323
Target:  5'- aGGCAcACGGC-CGG-GGCCcgGCCCUCg -3'
miRNA:   3'- aCUGU-UGUUGaGCCgCCGG--UGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 150613 0.66 0.896978
Target:  5'- aUGugGGCGAuCUUGGCgaucucGGCCACCUcCa -3'
miRNA:   3'- -ACugUUGUU-GAGCCG------CCGGUGGGaGa -5'
28905 5' -56.6 NC_006146.1 + 147349 0.77 0.351013
Target:  5'- uUGACAucuuugcGCGugUCGGCGGCCGCCa--- -3'
miRNA:   3'- -ACUGU-------UGUugAGCCGCCGGUGGgaga -5'
28905 5' -56.6 NC_006146.1 + 146781 0.68 0.813149
Target:  5'- cGACAgguACAgGCcCGGUGccaGCCGCCCUCg -3'
miRNA:   3'- aCUGU---UGU-UGaGCCGC---CGGUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 146273 0.67 0.861891
Target:  5'- gGACGcGCGACgUGGCGGCCccaguggaGCUCUCc -3'
miRNA:   3'- aCUGU-UGUUGaGCCGCCGG--------UGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 141156 0.68 0.830124
Target:  5'- --cCAGCAGCUgCGGUGGUUgguuCCCUCUu -3'
miRNA:   3'- acuGUUGUUGA-GCCGCCGGu---GGGAGA- -5'
28905 5' -56.6 NC_006146.1 + 137780 0.78 0.304628
Target:  5'- gGGCAGCGGCccggcgaacccgcCGGCGGCCACCCggCUg -3'
miRNA:   3'- aCUGUUGUUGa------------GCCGCCGGUGGGa-GA- -5'
28905 5' -56.6 NC_006146.1 + 137657 0.78 0.304628
Target:  5'- gGGCAGCGGCccggcggacccgcCGGCGGCCACCCggCUg -3'
miRNA:   3'- aCUGUUGUUGa------------GCCGCCGGUGGGa-GA- -5'
28905 5' -56.6 NC_006146.1 + 137535 0.78 0.304628
Target:  5'- gGGCAGCGGCccggcggacccacCGGCGGCCACCCggCUg -3'
miRNA:   3'- aCUGUUGUUGa------------GCCGCCGGUGGGa-GA- -5'
28905 5' -56.6 NC_006146.1 + 137490 0.66 0.909451
Target:  5'- cGGCGgcGCAGCggugcccaGGCgGGCCACCCc-- -3'
miRNA:   3'- aCUGU--UGUUGag------CCG-CCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 130302 0.67 0.869337
Target:  5'- cGGCGGCAug-CGGagguuCGGCCGCCCa-- -3'
miRNA:   3'- aCUGUUGUugaGCC-----GCCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 128821 0.71 0.659854
Target:  5'- gGGCGGCGGCagaGGgGGUCACCCUg- -3'
miRNA:   3'- aCUGUUGUUGag-CCgCCGGUGGGAga -5'
28905 5' -56.6 NC_006146.1 + 126159 0.66 0.909451
Target:  5'- cGACAaccACAGC-CGcccGCGGCCACCgcaUCa -3'
miRNA:   3'- aCUGU---UGUUGaGC---CGCCGGUGGg--AGa -5'
28905 5' -56.6 NC_006146.1 + 125096 0.71 0.639563
Target:  5'- aGGCGGCcgUggCGGCGGCCuuCCUCg -3'
miRNA:   3'- aCUGUUGuuGa-GCCGCCGGugGGAGa -5'
28905 5' -56.6 NC_006146.1 + 124716 0.67 0.869337
Target:  5'- aGAUAGaGACUCG--GGCCGCUCUCUg -3'
miRNA:   3'- aCUGUUgUUGAGCcgCCGGUGGGAGA- -5'
28905 5' -56.6 NC_006146.1 + 120985 0.66 0.896978
Target:  5'- gGACcgaGugGcCUCGGCGGCCuccgacuaCCUCUc -3'
miRNA:   3'- aCUG---UugUuGAGCCGCCGGug------GGAGA- -5'
28905 5' -56.6 NC_006146.1 + 119344 0.67 0.85424
Target:  5'- cGGCGGCGcccagggucaucACguaCGGCGGCUGCCC-Cg -3'
miRNA:   3'- aCUGUUGU------------UGa--GCCGCCGGUGGGaGa -5'
28905 5' -56.6 NC_006146.1 + 119120 0.69 0.777323
Target:  5'- gUGGCug-GACUCGGCucugggcagagaGGCCACCUUUUa -3'
miRNA:   3'- -ACUGuugUUGAGCCG------------CCGGUGGGAGA- -5'
28905 5' -56.6 NC_006146.1 + 118910 0.68 0.830124
Target:  5'- cGAgAGCAGgUUGGCGuCCACCgUCa -3'
miRNA:   3'- aCUgUUGUUgAGCCGCcGGUGGgAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.