miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28905 5' -56.6 NC_006146.1 + 147349 0.77 0.351013
Target:  5'- uUGACAucuuugcGCGugUCGGCGGCCGCCa--- -3'
miRNA:   3'- -ACUGU-------UGUugAGCCGCCGGUGGgaga -5'
28905 5' -56.6 NC_006146.1 + 119120 0.69 0.777323
Target:  5'- gUGGCug-GACUCGGCucugggcagagaGGCCACCUUUUa -3'
miRNA:   3'- -ACUGuugUUGAGCCG------------CCGGUGGGAGA- -5'
28905 5' -56.6 NC_006146.1 + 43278 0.68 0.786493
Target:  5'- aGGCAGCgGGC-CGGCGguGCCGCCCa-- -3'
miRNA:   3'- aCUGUUG-UUGaGCCGC--CGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 83640 0.66 0.909451
Target:  5'- gUGGCGGgGGCUCuGCgGGCCAgaCCUCc -3'
miRNA:   3'- -ACUGUUgUUGAGcCG-CCGGUg-GGAGa -5'
28905 5' -56.6 NC_006146.1 + 16118 0.73 0.528133
Target:  5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3'
miRNA:   3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 19196 0.73 0.528133
Target:  5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3'
miRNA:   3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 25352 0.73 0.528133
Target:  5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3'
miRNA:   3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 28430 0.73 0.528133
Target:  5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3'
miRNA:   3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 48097 0.72 0.568759
Target:  5'- cGGcCGACAGCgCGGCcucGGCCGCCCgUCUc -3'
miRNA:   3'- aCU-GUUGUUGaGCCG---CCGGUGGG-AGA- -5'
28905 5' -56.6 NC_006146.1 + 43492 0.69 0.768024
Target:  5'- uUGACAcCGGCUcCGGCGGCgggGCCCa-- -3'
miRNA:   3'- -ACUGUuGUUGA-GCCGCCGg--UGGGaga -5'
28905 5' -56.6 NC_006146.1 + 46369 0.71 0.66997
Target:  5'- cGACAGCAGCUCccccaGGCCcccguCCCUCg -3'
miRNA:   3'- aCUGUUGUUGAGccg--CCGGu----GGGAGa -5'
28905 5' -56.6 NC_006146.1 + 116079 0.73 0.537951
Target:  5'- gUGGCGACGuccugguGCauggUGGCGGCCACCCg-- -3'
miRNA:   3'- -ACUGUUGU-------UGa---GCCGCCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 53155 0.73 0.509666
Target:  5'- gUGGCGGCGACUgCGGCGGUgGCCggaaggCUCg -3'
miRNA:   3'- -ACUGUUGUUGA-GCCGCCGgUGG------GAGa -5'
28905 5' -56.6 NC_006146.1 + 113112 0.7 0.680056
Target:  5'- gUGGCAACAuGCagGGCGGCUGCCUcaaaUCUc -3'
miRNA:   3'- -ACUGUUGU-UGagCCGCCGGUGGG----AGA- -5'
28905 5' -56.6 NC_006146.1 + 67084 0.73 0.519353
Target:  5'- cGAgAAgGGgUCGGCGGCCACCaUCa -3'
miRNA:   3'- aCUgUUgUUgAGCCGCCGGUGGgAGa -5'
28905 5' -56.6 NC_006146.1 + 47578 0.73 0.535982
Target:  5'- cUGACGgccccGCAgacgucccggauccACUCGGCGGCCGCCagggaUCg -3'
miRNA:   3'- -ACUGU-----UGU--------------UGAGCCGCCGGUGGg----AGa -5'
28905 5' -56.6 NC_006146.1 + 45580 0.69 0.758607
Target:  5'- -cGC-GCAGC-CaGGCGGCCugCCUCg -3'
miRNA:   3'- acUGuUGUUGaG-CCGCCGGugGGAGa -5'
28905 5' -56.6 NC_006146.1 + 158821 0.69 0.777323
Target:  5'- aGGCAcACGGC-CGG-GGCCcgGCCCUCg -3'
miRNA:   3'- aCUGU-UGUUGaGCCgCCGG--UGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 13040 0.73 0.528133
Target:  5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3'
miRNA:   3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 22274 0.73 0.528133
Target:  5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3'
miRNA:   3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.