miRNA display CGI


Results 21 - 40 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28905 5' -56.6 NC_006146.1 + 44972 0.68 0.804415
Target:  5'- gGACu-CGACcgCGGUGGCCggACCCUUc -3'
miRNA:   3'- aCUGuuGUUGa-GCCGCCGG--UGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 43278 0.68 0.786493
Target:  5'- aGGCAGCgGGC-CGGCGguGCCGCCCa-- -3'
miRNA:   3'- aCUGUUG-UUGaGCCGC--CGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 116079 0.73 0.537951
Target:  5'- gUGGCGACGuccugguGCauggUGGCGGCCACCCg-- -3'
miRNA:   3'- -ACUGUUGU-------UGa---GCCGCCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 13040 0.73 0.528133
Target:  5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3'
miRNA:   3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 60665 0.66 0.876574
Target:  5'- cUGGCuucguGACAAggUGGCGGCUGCCgUCa -3'
miRNA:   3'- -ACUG-----UUGUUgaGCCGCCGGUGGgAGa -5'
28905 5' -56.6 NC_006146.1 + 62616 0.67 0.835901
Target:  5'- gUGGCAgacGCAcguauacaggcuggGCUuucCGGCGGCCugCCUgCUg -3'
miRNA:   3'- -ACUGU---UGU--------------UGA---GCCGCCGGugGGA-GA- -5'
28905 5' -56.6 NC_006146.1 + 119120 0.69 0.777323
Target:  5'- gUGGCug-GACUCGGCucugggcagagaGGCCACCUUUUa -3'
miRNA:   3'- -ACUGuugUUGAGCCG------------CCGGUGGGAGA- -5'
28905 5' -56.6 NC_006146.1 + 67084 0.73 0.519353
Target:  5'- cGAgAAgGGgUCGGCGGCCACCaUCa -3'
miRNA:   3'- aCUgUUgUUgAGCCGCCGGUGGgAGa -5'
28905 5' -56.6 NC_006146.1 + 118910 0.68 0.830124
Target:  5'- cGAgAGCAGgUUGGCGuCCACCgUCa -3'
miRNA:   3'- aCUgUUGUUgAGCCGCcGGUGGgAGa -5'
28905 5' -56.6 NC_006146.1 + 53155 0.73 0.509666
Target:  5'- gUGGCGGCGACUgCGGCGGUgGCCggaaggCUCg -3'
miRNA:   3'- -ACUGUUGUUGA-GCCGCCGgUGG------GAGa -5'
28905 5' -56.6 NC_006146.1 + 158821 0.69 0.777323
Target:  5'- aGGCAcACGGC-CGG-GGCCcgGCCCUCg -3'
miRNA:   3'- aCUGU-UGUUGaGCCgCCGG--UGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 55448 0.68 0.813149
Target:  5'- cGACAGCAGuaCcGUGGCCACCCg-- -3'
miRNA:   3'- aCUGUUGUUgaGcCGCCGGUGGGaga -5'
28905 5' -56.6 NC_006146.1 + 113112 0.7 0.680056
Target:  5'- gUGGCAACAuGCagGGCGGCUGCCUcaaaUCUc -3'
miRNA:   3'- -ACUGUUGU-UGagCCGCCGGUGGG----AGA- -5'
28905 5' -56.6 NC_006146.1 + 48097 0.72 0.568759
Target:  5'- cGGcCGACAGCgCGGCcucGGCCGCCCgUCUc -3'
miRNA:   3'- aCU-GUUGUUGaGCCG---CCGGUGGG-AGA- -5'
28905 5' -56.6 NC_006146.1 + 25352 0.73 0.528133
Target:  5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3'
miRNA:   3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 16118 0.73 0.528133
Target:  5'- cUGAgCGAUccuccgaGACUCcgggccccaaGGCGGCCGCCCUCa -3'
miRNA:   3'- -ACU-GUUG-------UUGAG----------CCGCCGGUGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 59073 0.66 0.903329
Target:  5'- gGGCGACgAGCUCuuGCugGGCCuCCCUCg -3'
miRNA:   3'- aCUGUUG-UUGAGc-CG--CCGGuGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 49672 0.66 0.883597
Target:  5'- gGGCAGgGggGCUaUGGCGGCgucguccuccucCACCCUCUc -3'
miRNA:   3'- aCUGUUgU--UGA-GCCGCCG------------GUGGGAGA- -5'
28905 5' -56.6 NC_006146.1 + 146273 0.67 0.861891
Target:  5'- gGACGcGCGACgUGGCGGCCccaguggaGCUCUCc -3'
miRNA:   3'- aCUGU-UGUUGaGCCGCCGG--------UGGGAGa -5'
28905 5' -56.6 NC_006146.1 + 112955 0.67 0.85424
Target:  5'- gUGGCAguggugauGCAGCaccaUGGCGGCgccggccagCGCCCUCUg -3'
miRNA:   3'- -ACUGU--------UGUUGa---GCCGCCG---------GUGGGAGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.