miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28906 3' -60.1 NC_006146.1 + 161757 0.66 0.764984
Target:  5'- -cGGCUGagguccgagGGgGcGCCUggGCGGGGGCCu -3'
miRNA:   3'- cuUCGACga-------CCgC-CGGA--CGCUCCUGG- -5'
28906 3' -60.1 NC_006146.1 + 122810 0.66 0.764984
Target:  5'- cGAGGCcgcGCUGuCGGCCgccgugaGCGAguacguGGACCg -3'
miRNA:   3'- -CUUCGa--CGACcGCCGGa------CGCU------CCUGG- -5'
28906 3' -60.1 NC_006146.1 + 154119 0.66 0.764984
Target:  5'- aGggGCUGUUGGacuuGGCCaucaUGuCGGuGACCa -3'
miRNA:   3'- -CuuCGACGACCg---CCGG----AC-GCUcCUGG- -5'
28906 3' -60.1 NC_006146.1 + 123331 0.66 0.755702
Target:  5'- -cAGCUGCUGGaagagggggugaCGGUUguagGCcgcgagGAGGACCg -3'
miRNA:   3'- cuUCGACGACC------------GCCGGa---CG------CUCCUGG- -5'
28906 3' -60.1 NC_006146.1 + 166076 0.66 0.754768
Target:  5'- --uGCUGCUGGUGuGCUgcuggugUGCugGAGGAgCCu -3'
miRNA:   3'- cuuCGACGACCGC-CGG-------ACG--CUCCU-GG- -5'
28906 3' -60.1 NC_006146.1 + 89926 0.66 0.753833
Target:  5'- cGGAGCUGCguuggcugcaaaGGUGGCaCUG-GAGGAa- -3'
miRNA:   3'- -CUUCGACGa-----------CCGCCG-GACgCUCCUgg -5'
28906 3' -60.1 NC_006146.1 + 115067 0.66 0.750082
Target:  5'- --uGUUGCUGGUGGCCgggugcccacccagGCGcuGGCUg -3'
miRNA:   3'- cuuCGACGACCGCCGGa-------------CGCucCUGG- -5'
28906 3' -60.1 NC_006146.1 + 123362 0.66 0.746316
Target:  5'- gGGAGCU-CUGGC-GCUgGcCGGGGGCCc -3'
miRNA:   3'- -CUUCGAcGACCGcCGGaC-GCUCCUGG- -5'
28906 3' -60.1 NC_006146.1 + 91841 0.66 0.746316
Target:  5'- --cGCaUGCguccGGC-GCCUGCGGacucGGACCa -3'
miRNA:   3'- cuuCG-ACGa---CCGcCGGACGCU----CCUGG- -5'
28906 3' -60.1 NC_006146.1 + 162375 0.66 0.746316
Target:  5'- uGGAGCcccUUGGCGcGCCcGCGcccGGGACCc -3'
miRNA:   3'- -CUUCGac-GACCGC-CGGaCGC---UCCUGG- -5'
28906 3' -60.1 NC_006146.1 + 114809 0.66 0.744428
Target:  5'- uGGAGgaGCUGGUGGCCgacaccuacuugGCccgguGGGACg -3'
miRNA:   3'- -CUUCgaCGACCGCCGGa-----------CGc----UCCUGg -5'
28906 3' -60.1 NC_006146.1 + 128057 0.66 0.736836
Target:  5'- --cGCguggGcCUGGCGGCCcuCGAGGcCCu -3'
miRNA:   3'- cuuCGa---C-GACCGCCGGacGCUCCuGG- -5'
28906 3' -60.1 NC_006146.1 + 143704 0.66 0.736836
Target:  5'- aGAAGUUaGcCUGG-GGCCUcgGAGGGCCu -3'
miRNA:   3'- -CUUCGA-C-GACCgCCGGAcgCUCCUGG- -5'
28906 3' -60.1 NC_006146.1 + 16185 0.66 0.736836
Target:  5'- --uGCUGCUGGCcGcCCUG-GuGGGCUg -3'
miRNA:   3'- cuuCGACGACCGcC-GGACgCuCCUGG- -5'
28906 3' -60.1 NC_006146.1 + 71449 0.66 0.736836
Target:  5'- -uGGCacCUGGC-GCCgaggaGCGAGGGCCu -3'
miRNA:   3'- cuUCGacGACCGcCGGa----CGCUCCUGG- -5'
28906 3' -60.1 NC_006146.1 + 124437 0.66 0.736836
Target:  5'- --cGCUGCUGGUcggcacgcauccGGCCUacGCcgccgccuuccuGGGGGCCc -3'
miRNA:   3'- cuuCGACGACCG------------CCGGA--CG------------CUCCUGG- -5'
28906 3' -60.1 NC_006146.1 + 142351 0.66 0.736836
Target:  5'- cGGGCagGCcgGGUcuugGGCCUGgGAGGuCCg -3'
miRNA:   3'- cUUCGa-CGa-CCG----CCGGACgCUCCuGG- -5'
28906 3' -60.1 NC_006146.1 + 148507 0.66 0.736836
Target:  5'- cGGGCagGCcgGGUcuugGGCCUGgGAGGuCCg -3'
miRNA:   3'- cUUCGa-CGa-CCG----CCGGACgCUCCuGG- -5'
28906 3' -60.1 NC_006146.1 + 151585 0.66 0.736836
Target:  5'- cGGGCagGCcgGGUcuugGGCCUGgGAGGuCCg -3'
miRNA:   3'- cUUCGa-CGa-CCG----CCGGACgCUCCuGG- -5'
28906 3' -60.1 NC_006146.1 + 157740 0.66 0.736836
Target:  5'- cGGGCagGCcgGGUcuugGGCCUGgGAGGuCCg -3'
miRNA:   3'- cUUCGa-CGa-CCG----CCGGACgCUCCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.