miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28907 3' -58.1 NC_006146.1 + 149957 0.66 0.84256
Target:  5'- gCGC-CCAGGCguugggagugggGGCCAGGGccUGCAg- -3'
miRNA:   3'- -GUGaGGUCCG------------UCGGUCCCuaGCGUac -5'
28907 3' -58.1 NC_006146.1 + 48475 0.66 0.841757
Target:  5'- -uUUCCGauagcauGGCGGCCA-GGAUcCGCGUGa -3'
miRNA:   3'- guGAGGU-------CCGUCGGUcCCUA-GCGUAC- -5'
28907 3' -58.1 NC_006146.1 + 34041 0.66 0.841757
Target:  5'- uGgUCCcgGGGCcuaugccGGCCGGGGGUCcCGUGg -3'
miRNA:   3'- gUgAGG--UCCG-------UCGGUCCCUAGcGUAC- -5'
28907 3' -58.1 NC_006146.1 + 3823 0.66 0.833626
Target:  5'- uCAggCCAGGCGgggcacccccgcuGCCcuaccggaccuGGGAUCGCAUGa -3'
miRNA:   3'- -GUgaGGUCCGU-------------CGGu----------CCCUAGCGUAC- -5'
28907 3' -58.1 NC_006146.1 + 46886 0.66 0.831152
Target:  5'- gGCUCCuGGGUguccgacgagcguaGGCCggguugaGGGGGUCGCAc- -3'
miRNA:   3'- gUGAGG-UCCG--------------UCGG-------UCCCUAGCGUac -5'
28907 3' -58.1 NC_006146.1 + 78824 0.66 0.825316
Target:  5'- aCGCgUCCAGGCAGCCguguccgGGGGAgagaacuccgGCAg- -3'
miRNA:   3'- -GUG-AGGUCCGUCGG-------UCCCUag--------CGUac -5'
28907 3' -58.1 NC_006146.1 + 100235 0.66 0.817688
Target:  5'- aGCUCCGuGGCAGUgGGGGcguucaCGCAc- -3'
miRNA:   3'- gUGAGGU-CCGUCGgUCCCua----GCGUac -5'
28907 3' -58.1 NC_006146.1 + 128966 0.66 0.812529
Target:  5'- gCGCUCCacGGGCcucggguucugccucAGCaaggGGGGGUCGCAg- -3'
miRNA:   3'- -GUGAGG--UCCG---------------UCGg---UCCCUAGCGUac -5'
28907 3' -58.1 NC_006146.1 + 123365 0.66 0.809057
Target:  5'- aGCUCUGGcGCuGGCCGGGGGcccCGCAa- -3'
miRNA:   3'- gUGAGGUC-CG-UCGGUCCCUa--GCGUac -5'
28907 3' -58.1 NC_006146.1 + 64863 0.66 0.800268
Target:  5'- gGCUCCaaguccggauGGGCGGCCAcGGccaGCAUGg -3'
miRNA:   3'- gUGAGG----------UCCGUCGGUcCCuagCGUAC- -5'
28907 3' -58.1 NC_006146.1 + 41843 0.66 0.800268
Target:  5'- aCAC-CCGGGCcguGGCCAGGGGcuaccggggccUCGUg-- -3'
miRNA:   3'- -GUGaGGUCCG---UCGGUCCCU-----------AGCGuac -5'
28907 3' -58.1 NC_006146.1 + 156682 0.67 0.79133
Target:  5'- -gUUUgGGGCGGCUGGGGGUCGgGcUGg -3'
miRNA:   3'- guGAGgUCCGUCGGUCCCUAGCgU-AC- -5'
28907 3' -58.1 NC_006146.1 + 34254 0.67 0.79133
Target:  5'- gACgCCGGGcCGGCUGGGGGUUGUg-- -3'
miRNA:   3'- gUGaGGUCC-GUCGGUCCCUAGCGuac -5'
28907 3' -58.1 NC_006146.1 + 138084 0.67 0.79133
Target:  5'- gACgCCGGGcCGGCUGGGGGUUGUg-- -3'
miRNA:   3'- gUGaGGUCC-GUCGGUCCCUAGCGuac -5'
28907 3' -58.1 NC_006146.1 + 128403 0.67 0.790428
Target:  5'- gCAgUCCAGGCagaacacGGCCAGGGGa-GgGUGa -3'
miRNA:   3'- -GUgAGGUCCG-------UCGGUCCCUagCgUAC- -5'
28907 3' -58.1 NC_006146.1 + 125172 0.67 0.782251
Target:  5'- gACUCUGGGCcaGGUCAGGG-UCGUg-- -3'
miRNA:   3'- gUGAGGUCCG--UCGGUCCCuAGCGuac -5'
28907 3' -58.1 NC_006146.1 + 169748 0.67 0.773039
Target:  5'- aGCcCCgGGGCGGcCCGGGGAcccUCGCGg- -3'
miRNA:   3'- gUGaGG-UCCGUC-GGUCCCU---AGCGUac -5'
28907 3' -58.1 NC_006146.1 + 168816 0.67 0.773039
Target:  5'- aGCcCCgGGGCGGcCCGGGGAcccUCGCGg- -3'
miRNA:   3'- gUGaGG-UCCGUC-GGUCCCU---AGCGUac -5'
28907 3' -58.1 NC_006146.1 + 44325 0.67 0.773039
Target:  5'- gGC-CguGGCAGCCGGGGGcuUCuGCAc- -3'
miRNA:   3'- gUGaGguCCGUCGGUCCCU--AG-CGUac -5'
28907 3' -58.1 NC_006146.1 + 167884 0.67 0.773039
Target:  5'- aGCcCCgGGGCGGcCCGGGGAcccUCGCGg- -3'
miRNA:   3'- gUGaGG-UCCGUC-GGUCCCU---AGCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.