miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28908 3' -55.8 NC_006146.1 + 170127 0.66 0.934955
Target:  5'- ----gCUACCACUGUCAUGgaUCCGaGUAg -3'
miRNA:   3'- guuagGGUGGUGGCAGUAC--AGGC-CGU- -5'
28908 3' -55.8 NC_006146.1 + 49870 0.66 0.934955
Target:  5'- ---gUCCAUCACCGUCggGaggcugggguccUCCGGUAg -3'
miRNA:   3'- guuaGGGUGGUGGCAGuaC------------AGGCCGU- -5'
28908 3' -55.8 NC_006146.1 + 16243 0.66 0.929922
Target:  5'- ---cCCCGCCACCacgGUGcagCCGGCGg -3'
miRNA:   3'- guuaGGGUGGUGGcagUACa--GGCCGU- -5'
28908 3' -55.8 NC_006146.1 + 136712 0.66 0.929922
Target:  5'- aGGUCCCugC-CUGgccCAggGUCCGGCu -3'
miRNA:   3'- gUUAGGGugGuGGCa--GUa-CAGGCCGu -5'
28908 3' -55.8 NC_006146.1 + 21322 0.66 0.929405
Target:  5'- --cUCCCGCCGCCccuuccaagaGUCAuucucggaggggcUG-CCGGCGg -3'
miRNA:   3'- guuAGGGUGGUGG----------CAGU-------------ACaGGCCGU- -5'
28908 3' -55.8 NC_006146.1 + 127412 0.66 0.924652
Target:  5'- ---cCCCGCCGCCGgagCcgGUGUCaaCGGCc -3'
miRNA:   3'- guuaGGGUGGUGGCa--G--UACAG--GCCGu -5'
28908 3' -55.8 NC_006146.1 + 165274 0.66 0.919147
Target:  5'- ---cCCCGCCAUgGcCAUGUCCcuGGUg -3'
miRNA:   3'- guuaGGGUGGUGgCaGUACAGG--CCGu -5'
28908 3' -55.8 NC_006146.1 + 107287 0.66 0.913406
Target:  5'- aAAUCuCCAgCACCGUCAUGUgUGcCAc -3'
miRNA:   3'- gUUAG-GGUgGUGGCAGUACAgGCcGU- -5'
28908 3' -55.8 NC_006146.1 + 117153 0.67 0.907431
Target:  5'- ---gCCCGCCGcCCGUCuucgccCCGGCGc -3'
miRNA:   3'- guuaGGGUGGU-GGCAGuaca--GGCCGU- -5'
28908 3' -55.8 NC_006146.1 + 118114 0.67 0.907431
Target:  5'- cCAGUCCCACUgcaaguucgGCCG-CuucgCCGGCAu -3'
miRNA:   3'- -GUUAGGGUGG---------UGGCaGuacaGGCCGU- -5'
28908 3' -55.8 NC_006146.1 + 109477 0.67 0.901223
Target:  5'- aCGAgUCCACCACUGUCGUGaaaCCugagGGCGg -3'
miRNA:   3'- -GUUaGGGUGGUGGCAGUACa--GG----CCGU- -5'
28908 3' -55.8 NC_006146.1 + 103120 0.67 0.901223
Target:  5'- ---cCUgGCCGCCGUCAcGUCCcuGGCc -3'
miRNA:   3'- guuaGGgUGGUGGCAGUaCAGG--CCGu -5'
28908 3' -55.8 NC_006146.1 + 168087 0.67 0.894786
Target:  5'- -cAUUCCGCCACCGcCuugGUCUGGa- -3'
miRNA:   3'- guUAGGGUGGUGGCaGua-CAGGCCgu -5'
28908 3' -55.8 NC_006146.1 + 21107 0.67 0.888122
Target:  5'- uGcgCCCGgggccaccuCCACCGUCAUcgCCGGCu -3'
miRNA:   3'- gUuaGGGU---------GGUGGCAGUAcaGGCCGu -5'
28908 3' -55.8 NC_006146.1 + 18029 0.67 0.888122
Target:  5'- uGcgCCCGgggccaccuCCACCGUCAUcgCCGGCu -3'
miRNA:   3'- gUuaGGGU---------GGUGGCAGUAcaGGCCGu -5'
28908 3' -55.8 NC_006146.1 + 54062 0.67 0.888122
Target:  5'- uCAGggCCCACCugGCCGcCGcGUCCcGGCAc -3'
miRNA:   3'- -GUUa-GGGUGG--UGGCaGUaCAGG-CCGU- -5'
28908 3' -55.8 NC_006146.1 + 27263 0.67 0.888122
Target:  5'- uGcgCCCGgggccaccuCCACCGUCAUcgCCGGCu -3'
miRNA:   3'- gUuaGGGU---------GGUGGCAGUAcaGGCCGu -5'
28908 3' -55.8 NC_006146.1 + 24185 0.67 0.888122
Target:  5'- uGcgCCCGgggccaccuCCACCGUCAUcgCCGGCu -3'
miRNA:   3'- gUuaGGGU---------GGUGGCAGUAcaGGCCGu -5'
28908 3' -55.8 NC_006146.1 + 20434 0.67 0.874129
Target:  5'- ---aCCaggggGCCACUGUCAuccagccccUGUCCGGCu -3'
miRNA:   3'- guuaGGg----UGGUGGCAGU---------ACAGGCCGu -5'
28908 3' -55.8 NC_006146.1 + 99066 0.68 0.866809
Target:  5'- ---aCCCACCACaGUgGUcUCCGGCu -3'
miRNA:   3'- guuaGGGUGGUGgCAgUAcAGGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.