miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28908 3' -55.8 NC_006146.1 + 54621 0.68 0.859281
Target:  5'- -cAUCCgGCCGCC-UCucugGUCCGGUg -3'
miRNA:   3'- guUAGGgUGGUGGcAGua--CAGGCCGu -5'
28908 3' -55.8 NC_006146.1 + 96025 0.68 0.85155
Target:  5'- gGAUCUgUGCCACCGgCAUGgugCCGGCc -3'
miRNA:   3'- gUUAGG-GUGGUGGCaGUACa--GGCCGu -5'
28908 3' -55.8 NC_006146.1 + 150048 0.68 0.835505
Target:  5'- ---cCCCugCAgCGUCAcgGUCuCGGCGa -3'
miRNA:   3'- guuaGGGugGUgGCAGUa-CAG-GCCGU- -5'
28908 3' -55.8 NC_006146.1 + 48417 0.68 0.827205
Target:  5'- uCGAcCCCGCCGCCGUCc---CCGaGCAa -3'
miRNA:   3'- -GUUaGGGUGGUGGCAGuacaGGC-CGU- -5'
28908 3' -55.8 NC_006146.1 + 12137 0.68 0.827205
Target:  5'- --uUCCCGC--CCGUCAUGUCCucGCAg -3'
miRNA:   3'- guuAGGGUGguGGCAGUACAGGc-CGU- -5'
28908 3' -55.8 NC_006146.1 + 48260 0.69 0.810959
Target:  5'- ---cCCCGCCGCCGUCcUGgcgcgaaagagggccCCGGCc -3'
miRNA:   3'- guuaGGGUGGUGGCAGuACa--------------GGCCGu -5'
28908 3' -55.8 NC_006146.1 + 56597 0.7 0.76465
Target:  5'- cCGAgCCCGCCGCCgGUCuccucgCCGGCGu -3'
miRNA:   3'- -GUUaGGGUGGUGG-CAGuaca--GGCCGU- -5'
28908 3' -55.8 NC_006146.1 + 48310 0.7 0.76465
Target:  5'- ---gCCCuCCACCGUCGgagGUgCUGGCGg -3'
miRNA:   3'- guuaGGGuGGUGGCAGUa--CA-GGCCGU- -5'
28908 3' -55.8 NC_006146.1 + 157242 0.7 0.763708
Target:  5'- uCAAUCUCauaggugGCCGCUGcCuGUGUCCGGCGc -3'
miRNA:   3'- -GUUAGGG-------UGGUGGCaG-UACAGGCCGU- -5'
28908 3' -55.8 NC_006146.1 + 47805 0.7 0.735922
Target:  5'- aGcgCCCACCGCCGUCucAUGggcUCgGGCu -3'
miRNA:   3'- gUuaGGGUGGUGGCAG--UAC---AGgCCGu -5'
28908 3' -55.8 NC_006146.1 + 115838 0.72 0.666191
Target:  5'- -cGUCCUgACCACCGUCAUGgccaccCCGGgGu -3'
miRNA:   3'- guUAGGG-UGGUGGCAGUACa-----GGCCgU- -5'
28908 3' -55.8 NC_006146.1 + 50378 0.72 0.655036
Target:  5'- gCAGUCCCGCCGCCG-CAUccacgcggcucgcGUCCucGGCc -3'
miRNA:   3'- -GUUAGGGUGGUGGCaGUA-------------CAGG--CCGu -5'
28908 3' -55.8 NC_006146.1 + 69030 0.73 0.568883
Target:  5'- --uUCCCGCCACCGUCcucgccccgccacccGUgGUgCGGCAg -3'
miRNA:   3'- guuAGGGUGGUGGCAG---------------UA-CAgGCCGU- -5'
28908 3' -55.8 NC_006146.1 + 166699 0.77 0.380369
Target:  5'- ----aCCACCACCGUCAUGaagCCGGUu -3'
miRNA:   3'- guuagGGUGGUGGCAGUACa--GGCCGu -5'
28908 3' -55.8 NC_006146.1 + 151993 0.81 0.234937
Target:  5'- ---cCCCACCACCGUCAgggUGUCuCGGUAg -3'
miRNA:   3'- guuaGGGUGGUGGCAGU---ACAG-GCCGU- -5'
28908 3' -55.8 NC_006146.1 + 17666 1.08 0.004107
Target:  5'- uCAAUCCCACCACCGUCAUGUCCGGCAu -3'
miRNA:   3'- -GUUAGGGUGGUGGCAGUACAGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.