Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28908 | 3' | -55.8 | NC_006146.1 | + | 69030 | 0.73 | 0.568883 |
Target: 5'- --uUCCCGCCACCGUCcucgccccgccacccGUgGUgCGGCAg -3' miRNA: 3'- guuAGGGUGGUGGCAG---------------UA-CAgGCCGU- -5' |
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28908 | 3' | -55.8 | NC_006146.1 | + | 151993 | 0.81 | 0.234937 |
Target: 5'- ---cCCCACCACCGUCAgggUGUCuCGGUAg -3' miRNA: 3'- guuaGGGUGGUGGCAGU---ACAG-GCCGU- -5' |
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28908 | 3' | -55.8 | NC_006146.1 | + | 118114 | 0.67 | 0.907431 |
Target: 5'- cCAGUCCCACUgcaaguucgGCCG-CuucgCCGGCAu -3' miRNA: 3'- -GUUAGGGUGG---------UGGCaGuacaGGCCGU- -5' |
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28908 | 3' | -55.8 | NC_006146.1 | + | 127412 | 0.66 | 0.924652 |
Target: 5'- ---cCCCGCCGCCGgagCcgGUGUCaaCGGCc -3' miRNA: 3'- guuaGGGUGGUGGCa--G--UACAG--GCCGu -5' |
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28908 | 3' | -55.8 | NC_006146.1 | + | 21322 | 0.66 | 0.929405 |
Target: 5'- --cUCCCGCCGCCccuuccaagaGUCAuucucggaggggcUG-CCGGCGg -3' miRNA: 3'- guuAGGGUGGUGG----------CAGU-------------ACaGGCCGU- -5' |
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28908 | 3' | -55.8 | NC_006146.1 | + | 136712 | 0.66 | 0.929922 |
Target: 5'- aGGUCCCugC-CUGgccCAggGUCCGGCu -3' miRNA: 3'- gUUAGGGugGuGGCa--GUa-CAGGCCGu -5' |
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28908 | 3' | -55.8 | NC_006146.1 | + | 16243 | 0.66 | 0.929922 |
Target: 5'- ---cCCCGCCACCacgGUGcagCCGGCGg -3' miRNA: 3'- guuaGGGUGGUGGcagUACa--GGCCGU- -5' |
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28908 | 3' | -55.8 | NC_006146.1 | + | 117153 | 0.67 | 0.907431 |
Target: 5'- ---gCCCGCCGcCCGUCuucgccCCGGCGc -3' miRNA: 3'- guuaGGGUGGU-GGCAGuaca--GGCCGU- -5' |
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28908 | 3' | -55.8 | NC_006146.1 | + | 103120 | 0.67 | 0.901223 |
Target: 5'- ---cCUgGCCGCCGUCAcGUCCcuGGCc -3' miRNA: 3'- guuaGGgUGGUGGCAGUaCAGG--CCGu -5' |
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28908 | 3' | -55.8 | NC_006146.1 | + | 168087 | 0.67 | 0.894786 |
Target: 5'- -cAUUCCGCCACCGcCuugGUCUGGa- -3' miRNA: 3'- guUAGGGUGGUGGCaGua-CAGGCCgu -5' |
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28908 | 3' | -55.8 | NC_006146.1 | + | 20434 | 0.67 | 0.874129 |
Target: 5'- ---aCCaggggGCCACUGUCAuccagccccUGUCCGGCu -3' miRNA: 3'- guuaGGg----UGGUGGCAGU---------ACAGGCCGu -5' |
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28908 | 3' | -55.8 | NC_006146.1 | + | 99066 | 0.68 | 0.866809 |
Target: 5'- ---aCCCACCACaGUgGUcUCCGGCu -3' miRNA: 3'- guuaGGGUGGUGgCAgUAcAGGCCGu -5' |
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28908 | 3' | -55.8 | NC_006146.1 | + | 12137 | 0.68 | 0.827205 |
Target: 5'- --uUCCCGC--CCGUCAUGUCCucGCAg -3' miRNA: 3'- guuAGGGUGguGGCAGUACAGGc-CGU- -5' |
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28908 | 3' | -55.8 | NC_006146.1 | + | 166699 | 0.77 | 0.380369 |
Target: 5'- ----aCCACCACCGUCAUGaagCCGGUu -3' miRNA: 3'- guuagGGUGGUGGCAGUACa--GGCCGu -5' |
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28908 | 3' | -55.8 | NC_006146.1 | + | 17666 | 1.08 | 0.004107 |
Target: 5'- uCAAUCCCACCACCGUCAUGUCCGGCAu -3' miRNA: 3'- -GUUAGGGUGGUGGCAGUACAGGCCGU- -5' |
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28908 | 3' | -55.8 | NC_006146.1 | + | 170127 | 0.66 | 0.934955 |
Target: 5'- ----gCUACCACUGUCAUGgaUCCGaGUAg -3' miRNA: 3'- guuagGGUGGUGGCAGUAC--AGGC-CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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