miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28908 5' -63.6 NC_006146.1 + 100164 0.66 0.633308
Target:  5'- --cGGCGGCguc-CGCgaGGGGGGCa -3'
miRNA:   3'- gcaCCGCCGguucGCGgaCCCCCUGc -5'
28908 5' -63.6 NC_006146.1 + 168571 0.66 0.633308
Target:  5'- cCGcGG-GGCCcGGCGCgUgccGGGGGACc -3'
miRNA:   3'- -GCaCCgCCGGuUCGCGgA---CCCCCUGc -5'
28908 5' -63.6 NC_006146.1 + 169503 0.66 0.633308
Target:  5'- cCGcGG-GGCCcGGCGCgUgccGGGGGACc -3'
miRNA:   3'- -GCaCCgCCGGuUCGCGgA---CCCCCUGc -5'
28908 5' -63.6 NC_006146.1 + 170434 0.66 0.633308
Target:  5'- cCGcGG-GGCCcGGCGCgUgccGGGGGACc -3'
miRNA:   3'- -GCaCCgCCGGuUCGCGgA---CCCCCUGc -5'
28908 5' -63.6 NC_006146.1 + 116099 0.66 0.632345
Target:  5'- gGUGGCGGCCAcccgAGgGUCcccguaaaacaagUGgaaGGGGACa -3'
miRNA:   3'- gCACCGCCGGU----UCgCGG-------------AC---CCCCUGc -5'
28908 5' -63.6 NC_006146.1 + 113676 0.66 0.62367
Target:  5'- gGUGGCucgGGcCCGGGCccgGCCUccggcccGGGGACGg -3'
miRNA:   3'- gCACCG---CC-GGUUCG---CGGAc------CCCCUGC- -5'
28908 5' -63.6 NC_006146.1 + 44942 0.66 0.62367
Target:  5'- uCGUGGCcaggGGCgCGGGgagGCCccGGGGGACu -3'
miRNA:   3'- -GCACCG----CCG-GUUCg--CGGa-CCCCCUGc -5'
28908 5' -63.6 NC_006146.1 + 92448 0.66 0.62367
Target:  5'- --aGGUGGCC---CGCCUGGGGucugaauuGGCGg -3'
miRNA:   3'- gcaCCGCCGGuucGCGGACCCC--------CUGC- -5'
28908 5' -63.6 NC_006146.1 + 168332 0.66 0.614038
Target:  5'- --gGGCggGGCCGGG-GCCUGgcGGGGGCc -3'
miRNA:   3'- gcaCCG--CCGGUUCgCGGAC--CCCCUGc -5'
28908 5' -63.6 NC_006146.1 + 146856 0.66 0.614038
Target:  5'- -cUGGCucggGGCCGcgucacccCGCCaGGGGGACGa -3'
miRNA:   3'- gcACCG----CCGGUuc------GCGGaCCCCCUGC- -5'
28908 5' -63.6 NC_006146.1 + 51571 0.66 0.614038
Target:  5'- gGUGGggaGGCgGcGCgGCCgaagGGGGGACu -3'
miRNA:   3'- gCACCg--CCGgUuCG-CGGa---CCCCCUGc -5'
28908 5' -63.6 NC_006146.1 + 144707 0.66 0.614038
Target:  5'- --aGGCGaGaCUggGCGgCUgcGGGGGACGc -3'
miRNA:   3'- gcaCCGC-C-GGuuCGCgGA--CCCCCUGC- -5'
28908 5' -63.6 NC_006146.1 + 137234 0.66 0.614038
Target:  5'- gGUGGgGGCCuGGgGUCccGGGGACc -3'
miRNA:   3'- gCACCgCCGGuUCgCGGacCCCCUGc -5'
28908 5' -63.6 NC_006146.1 + 167400 0.66 0.614038
Target:  5'- --gGGCggGGCCGGG-GCCUGgcGGGGGCc -3'
miRNA:   3'- gcaCCG--CCGGUUCgCGGAC--CCCCUGc -5'
28908 5' -63.6 NC_006146.1 + 156915 0.66 0.614038
Target:  5'- ----cCGGCCGAG-GCCUGGGuGGCGg -3'
miRNA:   3'- gcaccGCCGGUUCgCGGACCCcCUGC- -5'
28908 5' -63.6 NC_006146.1 + 170195 0.66 0.614038
Target:  5'- --gGGCggGGCCGGG-GCCUGgcGGGGGCc -3'
miRNA:   3'- gcaCCG--CCGGUUCgCGGAC--CCCCUGc -5'
28908 5' -63.6 NC_006146.1 + 169264 0.66 0.614038
Target:  5'- --gGGCggGGCCGGG-GCCUGgcGGGGGCc -3'
miRNA:   3'- gcaCCG--CCGGUUCgCGGAC--CCCCUGc -5'
28908 5' -63.6 NC_006146.1 + 89855 0.66 0.604418
Target:  5'- uGUGGCGcGUCcucGAuUGCCucagUGGGGGGCGa -3'
miRNA:   3'- gCACCGC-CGG---UUcGCGG----ACCCCCUGC- -5'
28908 5' -63.6 NC_006146.1 + 48335 0.66 0.604418
Target:  5'- gGUGGUgGGCCAGGCGUccaguCUGGccagcGGGcCGg -3'
miRNA:   3'- gCACCG-CCGGUUCGCG-----GACC-----CCCuGC- -5'
28908 5' -63.6 NC_006146.1 + 50843 0.66 0.604418
Target:  5'- -cUGGCGGuguCCAGGCuggUGGGGGAUGa -3'
miRNA:   3'- gcACCGCC---GGUUCGcggACCCCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.