miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28909 3' -50.4 NC_006146.1 + 121472 0.66 0.996058
Target:  5'- aUCGCCAacgCCGGGUCCAucGUggggGCCg- -3'
miRNA:   3'- cGGUGGUa--GGUCUAGGU--UAaa--CGGau -5'
28909 3' -50.4 NC_006146.1 + 52467 0.66 0.996058
Target:  5'- aGCCGCCGUgCAGGaCCucg--GCCa- -3'
miRNA:   3'- -CGGUGGUAgGUCUaGGuuaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 120810 0.66 0.996058
Target:  5'- cGCaACCGgagUCAGAUCCAgg-UGCCg- -3'
miRNA:   3'- -CGgUGGUa--GGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 95879 0.66 0.995379
Target:  5'- gGCC-CCGguUCCAGAUCCuguacugGCCc- -3'
miRNA:   3'- -CGGuGGU--AGGUCUAGGuuaaa--CGGau -5'
28909 3' -50.4 NC_006146.1 + 95831 0.66 0.995379
Target:  5'- gGCC-CCGgcUCCAGAUCCuguacugGCCc- -3'
miRNA:   3'- -CGGuGGU--AGGUCUAGGuuaaa--CGGau -5'
28909 3' -50.4 NC_006146.1 + 53884 0.66 0.994607
Target:  5'- cGCCcCCGUagggcguagcCCAGGUCCAGg--GCCc- -3'
miRNA:   3'- -CGGuGGUA----------GGUCUAGGUUaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 43701 0.66 0.994607
Target:  5'- gGCCACUacggcGUCCAGGUCCuggcgGAUUU-CCUc -3'
miRNA:   3'- -CGGUGG-----UAGGUCUAGG-----UUAAAcGGAu -5'
28909 3' -50.4 NC_006146.1 + 128174 0.66 0.993734
Target:  5'- -gCACCGcCCGGAUCCGcggcUGCCa- -3'
miRNA:   3'- cgGUGGUaGGUCUAGGUuaa-ACGGau -5'
28909 3' -50.4 NC_006146.1 + 110488 0.66 0.993734
Target:  5'- uCCACCccggCCAGGUCCAGgagggUGCa-- -3'
miRNA:   3'- cGGUGGua--GGUCUAGGUUaa---ACGgau -5'
28909 3' -50.4 NC_006146.1 + 105176 0.66 0.992751
Target:  5'- gGCCgcACCGUCCAGugaCCGGg--GCCg- -3'
miRNA:   3'- -CGG--UGGUAGGUCua-GGUUaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 13988 0.66 0.992751
Target:  5'- cGCCGCCAcCCAGG-CCucg--GCCg- -3'
miRNA:   3'- -CGGUGGUaGGUCUaGGuuaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 54822 0.66 0.992751
Target:  5'- cGCCACCAUgcaCCAGGacgucgCCAcAUUUGUCa- -3'
miRNA:   3'- -CGGUGGUA---GGUCUa-----GGU-UAAACGGau -5'
28909 3' -50.4 NC_006146.1 + 123311 0.66 0.992751
Target:  5'- gGCCGCCGagUGGAUCCGGgacGUCUGc -3'
miRNA:   3'- -CGGUGGUagGUCUAGGUUaaaCGGAU- -5'
28909 3' -50.4 NC_006146.1 + 3080 0.67 0.99165
Target:  5'- gGCUACCGUCCAGAccgcucuggagcUCUucuccgGCCUc -3'
miRNA:   3'- -CGGUGGUAGGUCU------------AGGuuaaa-CGGAu -5'
28909 3' -50.4 NC_006146.1 + 95975 0.67 0.99165
Target:  5'- gGCC-CagguUCCAGAUCCuguacUGCCUGg -3'
miRNA:   3'- -CGGuGgu--AGGUCUAGGuuaa-ACGGAU- -5'
28909 3' -50.4 NC_006146.1 + 8888 0.67 0.99165
Target:  5'- uCCACCGUggagCCGGucucCCAGggUGCCUAu -3'
miRNA:   3'- cGGUGGUA----GGUCua--GGUUaaACGGAU- -5'
28909 3' -50.4 NC_006146.1 + 40955 0.67 0.99165
Target:  5'- cCCACC--CCAGGUCCG---UGCCg- -3'
miRNA:   3'- cGGUGGuaGGUCUAGGUuaaACGGau -5'
28909 3' -50.4 NC_006146.1 + 116231 0.67 0.99165
Target:  5'- cGCCACCGUCUgggAGGUCUAcgacgggGCCc- -3'
miRNA:   3'- -CGGUGGUAGG---UCUAGGUuaaa---CGGau -5'
28909 3' -50.4 NC_006146.1 + 33240 0.67 0.990419
Target:  5'- gGCCGCCGg-CGGGUCCGccggGCCg- -3'
miRNA:   3'- -CGGUGGUagGUCUAGGUuaaaCGGau -5'
28909 3' -50.4 NC_006146.1 + 52851 0.67 0.989615
Target:  5'- cGCCGCCGcccccgcccgggggcUCCAGGUCCGug--GuCCUc -3'
miRNA:   3'- -CGGUGGU---------------AGGUCUAGGUuaaaC-GGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.