Results 41 - 60 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28909 | 3' | -50.4 | NC_006146.1 | + | 13227 | 0.67 | 0.989051 |
Target: 5'- gGCCugCggCCAGAcCCAGUUcuacaucaGCCUGg -3' miRNA: 3'- -CGGugGuaGGUCUaGGUUAAa-------CGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 129461 | 0.67 | 0.989051 |
Target: 5'- gGCCAgCC--CCAGAUCUAGga-GCCUAg -3' miRNA: 3'- -CGGU-GGuaGGUCUAGGUUaaaCGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 25159 | 0.67 | 0.989051 |
Target: 5'- uCUACC-UCCAGAUCCugcccgGCCa- -3' miRNA: 3'- cGGUGGuAGGUCUAGGuuaaa-CGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 81054 | 0.67 | 0.989051 |
Target: 5'- gGCCACCAaaUUC---UCCAGUUUcGCCUAg -3' miRNA: 3'- -CGGUGGU--AGGucuAGGUUAAA-CGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 8888 | 0.67 | 0.99165 |
Target: 5'- uCCACCGUggagCCGGucucCCAGggUGCCUAu -3' miRNA: 3'- cGGUGGUA----GGUCua--GGUUaaACGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 40955 | 0.67 | 0.99165 |
Target: 5'- cCCACC--CCAGGUCCG---UGCCg- -3' miRNA: 3'- cGGUGGuaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 95975 | 0.67 | 0.99165 |
Target: 5'- gGCC-CagguUCCAGAUCCuguacUGCCUGg -3' miRNA: 3'- -CGGuGgu--AGGUCUAGGuuaa-ACGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 137471 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 137564 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 136727 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 137192 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 137099 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 136913 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 116231 | 0.67 | 0.99165 |
Target: 5'- cGCCACCGUCUgggAGGUCUAcgacgggGCCc- -3' miRNA: 3'- -CGGUGGUAGG---UCUAGGUuaaa---CGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 33240 | 0.67 | 0.990419 |
Target: 5'- gGCCGCCGg-CGGGUCCGccggGCCg- -3' miRNA: 3'- -CGGUGGUagGUCUAGGUuaaaCGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 135984 | 0.67 | 0.989051 |
Target: 5'- gGCCGCUG-CCGGGUCCGc--UGCCc- -3' miRNA: 3'- -CGGUGGUaGGUCUAGGUuaaACGGau -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 60792 | 0.68 | 0.982006 |
Target: 5'- --aGCCGgaCCAGGUCCAGg--GCCUGg -3' miRNA: 3'- cggUGGUa-GGUCUAGGUUaaaCGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 143037 | 0.68 | 0.982006 |
Target: 5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3' miRNA: 3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 146115 | 0.68 | 0.982006 |
Target: 5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3' miRNA: 3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5' |
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28909 | 3' | -50.4 | NC_006146.1 | + | 155349 | 0.68 | 0.982006 |
Target: 5'- aGCCGgaGUCCAGAggggcCCGAgg-GCCUGa -3' miRNA: 3'- -CGGUggUAGGUCUa----GGUUaaaCGGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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